A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _

A

addAuthorisationFields(Map) - Method in CollectoryHubService

add api key and user email for authorisation and audit activities in collectory

addLicenseAndVersion(Map, String) - Method in CollectoryHubRestService

map license from temp data resource to license in data resource

adminChartOptions() - Method in TempDataResourceController

adminList() - Method in TempDataResourceController

List all temp data resources uploaded by this system.

after() - Method in TempDataResourceInterceptor

afterView() - Method in TempDataResourceInterceptor

Application - Class in au.org.ala.collectory

B

before() - Method in TempDataResourceInterceptor

BiocacheRestService - Class in au.org.ala.collectory

BootStrap - Class in au.org.ala.collectory

buildName(Map) - Method in CollectoryHubService

C

CamelCaseTagLib - Class in au.org.ala.collectory

chartOptions() - Method in TempDataResourceController

Retrieves data set chart configuration

checkIfMandatoryFieldsAreFilled(Map) - Method in CollectoryHubRestService

Checks if required fields are filled by owner of temp data resource.

CHTagLib - Class in au.org.ala.collectory

cleanTempDateResource(Map) - Method in CollectoryHubRestService

Make properties more human friendly

CollectoryController - Class in au.org.ala.collectory

CollectoryHubGrailsPlugin - Class in collectory.hub

CollectoryHubJenkinsService - Class in au.org.ala.collectory

CollectoryHubRestService - Class in au.org.ala.collectory

Helper funcitons to interacting with collectory for entities like temp data resource and data resource.

CollectoryHubService - Class in au.org.ala.collectory

console() - Method in JenkinsController

consoleMessage(String, String, String) - Method in CollectoryHubJenkinsService

Progressive console text lookup on Jenkins

convertTempDataResourceToDataResource(Map) - Method in CollectoryHubRestService

Map temp data resource properties to data resource properties

createAlertsLink(def, def) - Method in CHTagLib

createContact(Map) - Method in CollectoryHubRestService

Create contact details for a user

createContactMap(String) - Method in CollectoryHubRestService

Map details of contact from userdetails system to collectory compatible format.

createDr() - Method in TempDataResourceController

Test run a production ready dataset.

createOrSaveDataResource(String, Map) - Method in CollectoryHubRestService

Create or update a data resource.

createOrUpdateContactForEntity(String, String, Integer) - Method in CollectoryHubRestService

create a relationship between a contact and an entity

D

dataSetSearch() - Method in CollectoryController

a server side filtering of data resources based on client side querying

params:

- q - query string

@params - source - hub or all

decline() - Method in TempDataResourceController

Decline a submitted temp data resource.

declineTempDataResource(String) - Method in CollectoryHubRestService

Decline a data resource.

delete() - Method in TempDataResourceController

This function checks the status of a temp data resource before permitting a delete.

deleteAnEntity(String, String) - Method in CollectoryHubRestService

An function which will delete an entity on collectory

deleteDataResource(String) - Method in CollectoryHubRestService

delete a data resource

deleteTempDataResource(String) - Method in CollectoryHubRestService

delete a data resource

descendantDataResources(Map) - Method in CollectoryHubService

List the data resource uids linked to this institution

descendantUids(Map) - Method in CollectoryHubService

List the uids that identify this institution and all its descendant institutions.

doDelete(String) - Method in CollectoryHubService

This function does a http HEAD call on the given url.

doGet(String) - Method in CollectoryHubService

Do a get request.

doHead(String) - Method in CollectoryHubService

This function does a http HEAD call on the given url.

doPost(String, Map) - Method in CollectoryHubService

Post to a url with Map as the body parameter.

doWithApplicationContext() - Method in CollectoryHubGrailsPlugin

doWithDynamicMethods() - Method in CollectoryHubGrailsPlugin

doWithSpring() - Method in CollectoryHubGrailsPlugin

draftTempDataResource(String) - Method in CollectoryHubRestService

Set status of a data resource to draft.

E

editMetadata() - Method in TempDataResourceController

Edit a temp data resource's metadata.

error() - Method in TempDataResourceController

error page

F

formatFieldName(String) - Method in FormatService

formatProperty(String) - Method in FormatService

FormatService - Class in au.org.ala.collectory

G

getBuildNumberFromQueue(String, Integer) - Method in CollectoryHubJenkinsService

Get build number from queue url

getChartOptions(String) - Method in BiocacheRestService

getContact(String) - Method in CollectoryHubRestService

Get contact details of a user.

getCustomIndexes(String) - Method in BiocacheRestService

getDataResource(String) - Method in CollectoryHubRestService

get data resource id details and contact person details

getDataResources(String) - Method in CollectoryHubRestService

get all data resource id details satisfying a query condition.

getDataResourcesFromCollectory(String) - Method in CollectoryHubRestService

get detials of all data resource ids in collectory

getDateAndTimeFromTimeStamp(String) - Method in CollectoryHubRestService

convert a timestamp to human recognizable format

getFilteredDataResources(String, String) - Method in CollectoryHubRestService

Query data resource name and return a list of matching data resource ids

getInstitution(String) - Method in CollectoryHubRestService

get institution details and contact person details.

getListOfTempDataResource(String, String, String, String, String, String) - Method in CollectoryHubRestService

Get all temp data resource for a user.

getOrCreateContact(String, String) - Method in CollectoryHubRestService

get a user's contact id.

getPublicContactsPrimaryFirst(List) - Method in CollectoryHubService

Return all contacts for this group with the primary contact listed first filtered to only include those with the 'public' attribute.

getTempDataResource(String) - Method in CollectoryHubRestService

Get metadata of a temp data resource and append system metadata to it

getTempDataResourceFromCollectory(String) - Method in CollectoryHubRestService

Get metadata for a temp data resource from collectory

getUserUploads(String, String, String, String, String, String, String) - Method in CollectoryHubRestService

Retrieves a listing of uploads for this user.

H

I

i18n(String) - Method in MessagesController

Export raw i18n message properties as TEXT for use by JavaScript i18n library

init() - Method in CollectoryHubJenkinsService

init() - Method in CollectoryHubRestService

isAddressEmpty(def) - Method in CollectoryHubService

isDataSubmittedForTempDataResource(String) - Method in CollectoryHubRestService

check if data file is present for a given temp data resource

J

JenkinsController - Class in au.org.ala.collectory

K

L

list() - Method in CollectoryController

Render page to list data resources @return

loadToProduction(String, Boolean) - Method in CollectoryHubRestService

Load a temp data resource to production.

loadToProduction() - Method in TempDataResourceController

Webservice to load a temp data resource to production.

M

main(String) - Method in Application

MessagesController - Class in au.org.ala.collectory

myData() - Method in TempDataResourceController

List user uploaded data sets.

N

notAuthorised() - Method in TempDataResourceController

O

onChange(Map<String, Object>) - Method in CollectoryHubGrailsPlugin

onConfigChange(Map<String, Object>) - Method in CollectoryHubGrailsPlugin

onShutdown(Map<String, Object>) - Method in CollectoryHubGrailsPlugin

P

preFillSystemDetails(Map) - Method in CollectoryHubRestService

Pre-fill temp metadata with user name, links to resources etc

prettyCamel(String) - Method in FormatService

processWithIndexing(String, String) - Method in CollectoryHubJenkinsService

Run a jenkins job that does all steps including indexing.

processWithoutIndexing(String, String) - Method in CollectoryHubJenkinsService

Run a jenkins job that does all steps excluding indexing.

Q

R

reload() - Method in TempDataResourceController

This function checks the status of a temp data resource before permitting a reload.

resetStatus(String) - Method in CollectoryHubRestService

Set status of a dataset to draft

resetStatus() - Method in TempDataResourceController

Test run a production ready dataset.

resources() - Method in CollectoryController

A webservice to get all data resources for a hub or all ALA data

params:

source - hub or all

@return

S

saveChartOptions(String, def) - Method in BiocacheRestService

saveChartOptions() - Method in TempDataResourceController

Save new data set chart configuration @return

saveTempDataResource(Map, String) - Method in CollectoryHubRestService

Save temp data resource metadata on collectory.

saveTempDataResource() - Method in TempDataResourceController

Save dataset metadata.

showDataResource() - Method in CollectoryController

Get details for a data resource id and display it on a view.

showInstitution() - Method in CollectoryController

get details for an institution

params:

id - institution id

@return

submitDataForReview() - Method in TempDataResourceController

Submit a temp data resource for review.

submitParameterizedJob(String, String, String) - Method in CollectoryHubJenkinsService

Submit a parameterized job to jenkins.

submitTempDataResourceForReview(String) - Method in CollectoryHubRestService

Submit a user uploaded dataset for review.

T

TempDataResourceController - Class in au.org.ala.collectory

All interactions with Temp Data Resource collectory instance is done through this controller.

TempDataResourceInterceptor - Class in au.org.ala.collectory

TempDataResourceInterceptor() - Constructor in TempDataResourceInterceptor

testRun(String) - Method in CollectoryHubJenkinsService

Test run a production ready dataset

testRun() - Method in TempDataResourceController

Test run a production ready dataset.

U

UrlMappings - Class in au.org.ala.collectory

V

viewMetadata() - Method in TempDataResourceController

This function shows the metadata for a temp data resource.

W

X

Y

Z

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