A B C D E F G H I J K L M N O P Q R S T U V W Y

A

AbstractSecureController - Class in au.org.ala.biocache.web

Controllers that need to perform security checks should extend this class and call shouldPerformOperation

AbstractSecureController() - Constructor for class au.org.ala.biocache.web.AbstractSecureController

addAssertion(String, HttpServletRequest, HttpServletResponse) - Method in class au.org.ala.biocache.web.AssertionController

add an assertion

addAssertionWithParams(String, HttpServletRequest, HttpServletResponse) - Method in class au.org.ala.biocache.web.AssertionController

This version of the method can handle the situation where we use rowKeys as Uuids.

addBulkAssertions(HttpServletRequest, HttpServletResponse) - Method in class au.org.ala.biocache.web.AssertionController

Adds a bulk list of assertions.

addDownloadToQueue(DownloadDetailsDTO) - Method in class au.org.ala.biocache.dao.JsonPersistentQueueDAOImpl

addDownloadToQueue(DownloadDetailsDTO) - Method in interface au.org.ala.biocache.dao.PersistentQueueDAO

Adds the supplied download to the offline queue

addFacetMap(String[], Set<String>) - Method in class au.org.ala.biocache.util.SearchUtils

Create a HashMap for the filter queries, using the first SOLR field as the key and subsequent query string as the value.

addSpatialParams(String, Boolean) - Method in class au.org.ala.biocache.dto.SpatialSearchRequestParams

Add the spatial params to the param string

addToFilterQuery(String) - Method in class au.org.ala.biocache.dto.SearchQuery

addValidationRule(HttpServletRequest, HttpServletResponse) - Method in class au.org.ala.biocache.web.ValidationRuleController

Example expected payload { "status": "new", "ignored": false, "apiKey": "XXXXXXXXXX", "user": { "isAdmin": true, "email": "xxxxxxxx@gmail.com", "authority": 1000 }, "classification": "invalid", "area": "MULTIPOLYGON(((137.5 -26,137.5 -25.5,138 -25.5,138 -26,137.5 -26)),((134.5 -29.5,134.5 -29,135 -29,135 -29.5,134.5 -29.5)))", "lastModified": "2013-01-01T09:05:19", "id": 5090, "comment": "", "species": "Trichoglossus haematodus" }

AdminController - Class in au.org.ala.biocache.web

Provides administration web services for the biocache-service.

AdminController() - Constructor for class au.org.ala.biocache.web.AdminController

AlaFileUtils - Class in au.org.ala.biocache.util

A set of File Utils that may be common to ALA.

AlaFileUtils() - Constructor for class au.org.ala.biocache.util.AlaFileUtils

AlaImageMetadataService - Class in au.org.ala.biocache.service

The ALA implementation of the image metadata service.

AlaImageMetadataService() - Constructor for class au.org.ala.biocache.service.AlaImageMetadataService

AlaLayersService - Class in au.org.ala.biocache.service

The ALA Spatial portal implementation for the layer service.

AlaLayersService() - Constructor for class au.org.ala.biocache.service.AlaLayersService

allFacets - Static variable in class au.org.ala.biocache.dto.FacetThemes

allThemes - Static variable in class au.org.ala.biocache.dto.FacetThemes

alreadyIndexedFields - Static variable in class au.org.ala.biocache.web.UploadController

alternativeFormats - Variable in class au.org.ala.biocache.dto.MediaDTO

apiCheckUrl - Variable in class au.org.ala.biocache.web.AbstractSecureController

apiKey - Variable in class au.org.ala.biocache.dto.ValidationRuleDTO

AppConfig - Class in au.org.ala.biocache.config

This class handles the switching between implementations of interfaces based on external configuration.

AppConfig() - Constructor for class au.org.ala.biocache.config.AppConfig

applyValidationRule(String, HttpServletRequest) - Method in class au.org.ala.biocache.web.ValidationRuleController

area - Variable in class au.org.ala.biocache.dto.ValidationRuleDTO

areDwcTerms(HttpServletRequest, HttpServletResponse) - Method in class au.org.ala.biocache.web.ParserController

Expects a request body in JSON

AssertionController - Class in au.org.ala.biocache.web

This controller provides web services for assertion creation/deletion.

AssertionController() - Constructor for class au.org.ala.biocache.web.AssertionController

AssertionUtils - Class in au.org.ala.biocache.util

AssertionUtils() - Constructor for class au.org.ala.biocache.util.AssertionUtils

assertionUtils - Variable in class au.org.ala.biocache.web.AssertionController

assertionUtils - Variable in class au.org.ala.biocache.web.OccurrenceController

assertionUtils - Variable in class au.org.ala.biocache.web.ValidationRuleController

au.org.ala.biocache.config - package au.org.ala.biocache.config

au.org.ala.biocache.dao - package au.org.ala.biocache.dao

au.org.ala.biocache.dto - package au.org.ala.biocache.dto

au.org.ala.biocache.heatmap - package au.org.ala.biocache.heatmap

au.org.ala.biocache.service - package au.org.ala.biocache.service

au.org.ala.biocache.util - package au.org.ala.biocache.util

au.org.ala.biocache.util.thread - package au.org.ala.biocache.util.thread

au.org.ala.biocache.validate - package au.org.ala.biocache.validate

au.org.ala.biocache.web - package au.org.ala.biocache.web

au.org.ala.biocache.writer - package au.org.ala.biocache.writer

authority - Variable in class au.org.ala.biocache.dto.ValidationUserDTO

authService - Variable in class au.org.ala.biocache.dao.SearchDAOImpl

AuthService - Class in au.org.ala.biocache.service

Service to lookup and cache user details from auth.ala.org.au (CAS) NC 2013-01-09: Copied across from hubs-webapp.

AuthService() - Constructor for class au.org.ala.biocache.service.AuthService

authService - Variable in class au.org.ala.biocache.util.AssertionUtils

authService - Variable in class au.org.ala.biocache.web.AdminController

authService - Variable in class au.org.ala.biocache.web.AssertionController

authService - Variable in class au.org.ala.biocache.web.OccurrenceController

authService - Variable in class au.org.ala.biocache.web.ValidationRuleController

authServiceFields - Variable in class au.org.ala.biocache.dao.SearchDAOImpl

Comma separated list of solr fields that need to have the authService substitute values if they are used in a facet.

B

baseWsUrl - Variable in class au.org.ala.biocache.web.WMSController

batchDownload(HttpServletResponse, HttpServletRequest, String, String, String, String) - Method in class au.org.ala.biocache.web.OccurrenceController

Webservice to support bulk downloads for a long list of queries for a single field.

batchDownload(HttpServletResponse, HttpServletRequest, DownloadRequestParams, BindingResult, String, String, String, Model) - Method in class au.org.ala.biocache.web.OccurrenceController

batchSearch(HttpServletResponse, String, String, String, String, String) - Method in class au.org.ala.biocache.web.OccurrenceController

Given a list of queries for a single field, return an AJAX response with the qid (cached query id) NOTE: triggered on "Search" button

bboxToQuery(String, ArrayList<String>) - Method in class au.org.ala.biocache.web.MapController

Reformat bbox param to SOLR spatial query and add to fq list

bieUriPrefix - Variable in class au.org.ala.biocache.config.AppConfig

URI prefix for bie-service - may be overridden in properties file

bieUriPrefix - Variable in class au.org.ala.biocache.service.SpeciesLookupRestService

biocacheMediaDir - Static variable in class au.org.ala.biocache.dao.SearchDAOImpl

biocacheMediaDir - Static variable in class au.org.ala.biocache.service.DownloadService

biocacheMediaUrl - Static variable in class au.org.ala.biocache.dao.SearchDAOImpl

biocacheMediaUrl - Static variable in class au.org.ala.biocache.service.DownloadService

biocacheMediaUrl - Variable in class au.org.ala.biocache.web.OccurrenceController

boundingBox(SpatialSearchRequestParams, HttpServletResponse) - Method in class au.org.ala.biocache.web.WMSController

Get query bounding box as csv containing: min longitude, min latitude, max longitude, max latitude

breakdownByCollection(BreakdownRequestParams, String, HttpServletResponse) - Method in class au.org.ala.biocache.web.BreakdownController

Performs a breakdown based on a collection

breakdownByDataHub(BreakdownRequestParams, String, HttpServletResponse) - Method in class au.org.ala.biocache.web.BreakdownController

Performs a breakdown based on a data hub

breakdownByDataProvider(BreakdownRequestParams, String, HttpServletResponse) - Method in class au.org.ala.biocache.web.BreakdownController

Performs a breakdown based on a data provider

breakdownByDataResource(BreakdownRequestParams, String, HttpServletResponse) - Method in class au.org.ala.biocache.web.BreakdownController

Performs a breakdown based on a data resource

breakdownByInstitution(BreakdownRequestParams, String, HttpServletResponse) - Method in class au.org.ala.biocache.web.BreakdownController

Performs a breakdown based on an institution

breakdownByQuery(BreakdownRequestParams, HttpServletResponse) - Method in class au.org.ala.biocache.web.BreakdownController

BreakdownController - Class in au.org.ala.biocache.web

A simple controller for providing breakdowns on top of the biocache.

BreakdownController() - Constructor for class au.org.ala.biocache.web.BreakdownController

BreakdownRequestParams - Class in au.org.ala.biocache.dto

A DTO for the parameters used in the breakdown services.

BreakdownRequestParams() - Constructor for class au.org.ala.biocache.dto.BreakdownRequestParams

buildSpatialQueryString(String, Float, Float, Float) - Method in class au.org.ala.biocache.dao.SearchDAOImpl

Build the query string for a spatial query (using Spatial-Solr plugin syntax) TODO change param type to SearchRequestParams New plugin syntax {!spatial circles=52.347,4.453,10} TODO different types of spatial queries...

buildSpatialQueryString(SpatialSearchRequestParams) - Method in class au.org.ala.biocache.dao.SearchDAOImpl

C

calculateBreakdown(BreakdownRequestParams) - Method in interface au.org.ala.biocache.dao.SearchDAO

Calculate taxon breakdown.

calculateBreakdown(BreakdownRequestParams) - Method in class au.org.ala.biocache.dao.SearchDAOImpl

Calculates the breakdown of the supplied query based on the supplied params

call() - Method in class au.org.ala.biocache.util.thread.EndemicCallable

CHARS - Static variable in class au.org.ala.biocache.dao.SearchDAOImpl

citationsEnabled - Variable in class au.org.ala.biocache.service.DownloadService

citationServiceUrl - Variable in class au.org.ala.biocache.service.DownloadService

classification - Variable in class au.org.ala.biocache.dto.ValidationRuleDTO

clearObjects() - Method in class au.org.ala.biocache.util.WMSTile

collection_uid - Variable in class au.org.ala.biocache.util.CollectionsCache

collectionContactsUrl - Variable in class au.org.ala.biocache.util.ContactUtils

collections - Variable in class au.org.ala.biocache.util.CollectionsCache

CollectionsCache - Class in au.org.ala.biocache.util

Provides access to the collection and institution codes and names from the Collectory.

CollectionsCache() - Constructor for class au.org.ala.biocache.util.CollectionsCache

CollectionsCache.ResourceType - Enum in au.org.ala.biocache.util

Inner enum class

ColorUtil - Class in au.org.ala.biocache.util

ColorUtil() - Constructor for class au.org.ala.biocache.util.ColorUtil

comment - Variable in class au.org.ala.biocache.dto.ValidationRuleDTO

COMMON_NAME_AND_LSID - Static variable in class au.org.ala.biocache.dao.SearchDAOImpl

commonName - Variable in class au.org.ala.biocache.dto.TaxaCountDTO

compareOccurrenceVersions(String) - Method in class au.org.ala.biocache.web.OccurrenceController

Returns a comparison of the occurrence versions.

compareTo(FieldResultDTO) - Method in class au.org.ala.biocache.dto.FieldResultDTO

compareTo(IndexFieldDTO) - Method in class au.org.ala.biocache.dto.IndexFieldDTO

compareTo(LegendItem) - Method in class au.org.ala.biocache.util.LegendItem

Sort 'count', descending, then 'name' ascending.

concurrentDownloads - Variable in class au.org.ala.biocache.service.DownloadService

Number of threads to perform to offline downloads on can be configured.

conditionalEncode(String, Boolean) - Method in class au.org.ala.biocache.dto.SearchRequestParams

URI encode the param value if isEncoded is true

ContactDTO - Class in au.org.ala.biocache.dto

Represents a contact for the system that may or may not have a role within an entity such as a collection.

ContactDTO() - Constructor for class au.org.ala.biocache.dto.ContactDTO

contactUtils - Variable in class au.org.ala.biocache.util.AssertionUtils

ContactUtils - Class in au.org.ala.biocache.util

Utilities for dealing with contacts and user roles.

ContactUtils() - Constructor for class au.org.ala.biocache.util.ContactUtils

contactUtils - Variable in class au.org.ala.biocache.web.OccurrenceController

contentType - Variable in class au.org.ala.biocache.dto.MediaDTO

convertLatToPixel(double) - Method in class au.org.ala.biocache.web.MapController

convertLngToPixel(double) - Method in class au.org.ala.biocache.web.MapController

convertRankAndName(String) - Method in class au.org.ala.biocache.util.SearchUtils

Extracts the a rank and name from a query.

convertToDegrees(Float) - Static method in class au.org.ala.biocache.util.SpatialUtils

Turns the number of km in a degreee representation based on a conversion factor in Australia.

coordinates - Variable in class au.org.ala.biocache.dto.OccurrencePoint

count - Variable in class au.org.ala.biocache.dto.DataProviderCountDTO

count - Variable in class au.org.ala.biocache.dto.OccurrencePoint

count - Variable in class au.org.ala.biocache.dto.TaxaCountDTO

createZip(String, String) - Static method in class au.org.ala.biocache.util.AlaFileUtils

Creates a zip file at the specified path with the contents of the specified directory.

CSVRecordWriter - Class in au.org.ala.biocache.writer

A Writer that outputs a record in CSV format

CSVRecordWriter(OutputStream, String[]) - Constructor for class au.org.ala.biocache.writer.CSVRecordWriter

CSVRecordWriter(OutputStream, String[], char, char) - Constructor for class au.org.ala.biocache.writer.CSVRecordWriter

CustomDateSerializer - Class in au.org.ala.biocache.util

Custom Date formatter for Jackson JSON output.

CustomDateSerializer() - Constructor for class au.org.ala.biocache.util.CustomDateSerializer

customIndexes(String, HttpServletResponse) - Method in class au.org.ala.biocache.web.UploadController

Upload a dataset using a POST, returning a UID for this data

D

data_hub_uid - Variable in class au.org.ala.biocache.util.CollectionsCache

data_provider_uid - Variable in class au.org.ala.biocache.util.CollectionsCache

data_resource_uid - Variable in class au.org.ala.biocache.util.CollectionsCache

dataHubs - Variable in class au.org.ala.biocache.util.CollectionsCache

DataProviderCountDTO - Class in au.org.ala.biocache.dto

DataProviderCountDTO() - Constructor for class au.org.ala.biocache.dto.DataProviderCountDTO

DataProviderCountDTO(String, String, long) - Constructor for class au.org.ala.biocache.dto.DataProviderCountDTO

dataProviders - Variable in class au.org.ala.biocache.util.CollectionsCache

dataResources - Variable in class au.org.ala.biocache.util.CollectionsCache

DECADE_FACET_NAME - Static variable in class au.org.ala.biocache.dao.SearchDAOImpl

defaultFields - Static variable in class au.org.ala.biocache.dto.OccurrenceIndex

defaultParams - Static variable in class au.org.ala.biocache.util.SearchUtils

degreesLatPerKm(double, double) - Static method in class au.org.ala.biocache.util.SpatialUtils

Returns the number of degrees of latitude per km at a given Location.

deleteAssertion(String, String, HttpServletRequest, HttpServletResponse) - Method in class au.org.ala.biocache.web.AssertionController

Remove an assertion

deleteAssertionWithParams(String, String, HttpServletRequest, HttpServletResponse) - Method in class au.org.ala.biocache.web.AssertionController

Removes an assertion This version of the method can handle the situation where we use rowKeys as Uuids.

deleteOldParamFiles() - Static method in class au.org.ala.biocache.util.ParamsCache

delete save params cache objects that are older than MAX_FILE_AGE.

destroy() - Method in class au.org.ala.biocache.web.LoggerConfigFilter

dir - Variable in class au.org.ala.biocache.dto.SearchRequestParams

displayName - Variable in class au.org.ala.biocache.dto.Facet

doFilter(ServletRequest, ServletResponse, FilterChain) - Method in class au.org.ala.biocache.web.LoggerConfigFilter

downloadBatchSize - Variable in class au.org.ala.biocache.dao.SearchDAOImpl

Batch size for a download

DownloadController - Class in au.org.ala.biocache.web

A Controller for downloading records based on queries.

DownloadController() - Constructor for class au.org.ala.biocache.web.DownloadController

DownloadDetailsDTO - Class in au.org.ala.biocache.dto

Stores the details of a download.

DownloadDetailsDTO() - Constructor for class au.org.ala.biocache.dto.DownloadDetailsDTO

Default constructor necessary for Jackson to create an object from the JSON.

DownloadDetailsDTO(String, String, DownloadDetailsDTO.DownloadType) - Constructor for class au.org.ala.biocache.dto.DownloadDetailsDTO

DownloadDetailsDTO(DownloadRequestParams, String, DownloadDetailsDTO.DownloadType) - Constructor for class au.org.ala.biocache.dto.DownloadDetailsDTO

DownloadDetailsDTO.DownloadType - Enum in au.org.ala.biocache.dto

Encompasses the different types of downloads that can be performed.

downloadFacet(DownloadRequestParams, boolean, boolean, boolean, String, HttpServletRequest, HttpServletResponse) - Method in class au.org.ala.biocache.web.OccurrenceController

Downloads the complete list of values in the supplied facet ONLY 1 facet should be included in the params.

downloadFields - Variable in class au.org.ala.biocache.dao.SearchDAOImpl

Download properties

DownloadFields - Class in au.org.ala.biocache.util

Stores the download fields whose values can be overridden in a properties file.

DownloadFields(Set<IndexFieldDTO>) - Constructor for class au.org.ala.biocache.util.DownloadFields

downloadLimits - Variable in class au.org.ala.biocache.util.CollectionsCache

DownloadRequestParams - Class in au.org.ala.biocache.dto

Data Transfer Object to represent the request parameters required to download the results of a search.

DownloadRequestParams() - Constructor for class au.org.ala.biocache.dto.DownloadRequestParams

DownloadService - Class in au.org.ala.biocache.service

Services to perform the downloads.

DownloadService() - Constructor for class au.org.ala.biocache.service.DownloadService

downloadService - Variable in class au.org.ala.biocache.web.OccurrenceController

drawLegend(String) - Method in class au.org.ala.biocache.heatmap.HeatMap

drawOutput(String, boolean) - Method in class au.org.ala.biocache.heatmap.HeatMap

Outputs the image to the supplied file path.

dumpDistinctLatLongs(SearchRequestParams, HttpServletResponse) - Method in class au.org.ala.biocache.web.OccurrenceController

Dumps the distinct latitudes and longitudes that are used in the connected index (to 4 decimal places)

DuplicationController - Class in au.org.ala.biocache.web

DuplicationController() - Constructor for class au.org.ala.biocache.web.DuplicationController

dynamicFacets(SpatialSearchRequestParams, HttpServletResponse) - Method in class au.org.ala.biocache.web.UploadController

Upload a dataset using a POST, returning a UID for this data

E

EARTH_RADIUS_EQUATORIAL - Static variable in class au.org.ala.biocache.util.SpatialUtils

The equatorial radius of the earth [6378.1370 km] (see Wikipedia) as derived from the WGS-84 ellipsoid.

EARTH_RADIUS_MEAN - Static variable in class au.org.ala.biocache.util.SpatialUtils

The Authalic mean radius (Ar) of the earth [6371.0072 km] (see Wikipedia).

EARTH_RADIUS_POLAR - Static variable in class au.org.ala.biocache.util.SpatialUtils

The polar radius of the earth [6356.7523 km] (see Wikipedia) as derived from the WGS-84 ellipsoid.

email - Variable in class au.org.ala.biocache.dto.DownloadRequestParams

email - Variable in class au.org.ala.biocache.dto.ValidationUserDTO

EmailService - Class in au.org.ala.biocache.service

A service responsible for sending emails.

EmailService() - Constructor for class au.org.ala.biocache.service.EmailService

empty() - Static method in class au.org.ala.biocache.util.WMSCache

empty the WMSCache

enabled - Variable in class au.org.ala.biocache.config.AppConfig

enabled - Variable in class au.org.ala.biocache.service.AlaLayersService

enabled - Variable in class au.org.ala.biocache.service.AuthService

enabled - Variable in class au.org.ala.biocache.service.LoggerRestService

enabled - Variable in class au.org.ala.biocache.service.SpeciesLookupRestService

enabled - Variable in class au.org.ala.biocache.util.CollectionsCache

EndemicCallable - Class in au.org.ala.biocache.util.thread

The class essentially wraps the extraction of a set of endemic facets into a thread.

EndemicCallable(SpatialSearchRequestParams, int, SearchDAO) - Constructor for class au.org.ala.biocache.util.thread.EndemicCallable

enhanceQA(OccurrenceDTO, QualityAssertion) - Method in class au.org.ala.biocache.util.AssertionUtils

enhanceQA(String, QualityAssertion) - Method in class au.org.ala.biocache.util.AssertionUtils

equals(Object) - Method in class au.org.ala.biocache.dto.FieldResultDTO

equals(Object) - Method in class au.org.ala.biocache.dto.IndexFieldDTO

esc - Variable in class au.org.ala.biocache.dto.DownloadRequestParams

The CSV escape character to use

ExploreController - Class in au.org.ala.biocache.web

Controller for the "explore your area" page

ExploreController() - Constructor for class au.org.ala.biocache.web.ExploreController

extra - Variable in class au.org.ala.biocache.dto.DownloadRequestParams

CSV list of extra fields to be added to the download - useful if wish to make use of default list

extractBySpeciesGroups(String, String, String[], Writer) - Method in interface au.org.ala.biocache.dao.TaxonDAO

Writes a hierarchy to the writer that matches the supplied query.

extractBySpeciesGroups(String, String, String[], Writer) - Method in class au.org.ala.biocache.dao.TaxonDAOImpl

extractHierarchy(String, String, String[], Writer) - Method in interface au.org.ala.biocache.dao.TaxonDAO

Writes a hierarchy to the writer that matches the supplied query.

extractHierarchy(String, String, String[], Writer) - Method in class au.org.ala.biocache.dao.TaxonDAOImpl

F

Facet - Class in au.org.ala.biocache.dto

A representation of a facet value.

Facet() - Constructor for class au.org.ala.biocache.dto.Facet

Facet(String, String) - Constructor for class au.org.ala.biocache.dto.Facet

facet - Variable in class au.org.ala.biocache.dto.SearchRequestParams

To disable facets

FACET_NAME - Static variable in enum au.org.ala.biocache.dto.OccurrenceSource

FACET_PAGE_SIZE - Static variable in class au.org.ala.biocache.dao.SearchDAOImpl

facetConfig - Variable in class au.org.ala.biocache.web.OccurrenceController

FacetResultDTO - Class in au.org.ala.biocache.dto

Facet result for a SOLR search

FacetResultDTO(String, List<FieldResultDTO>) - Constructor for class au.org.ala.biocache.dto.FacetResultDTO

Constructor

FacetResultDTO(String, List<FieldResultDTO>, Integer) - Constructor for class au.org.ala.biocache.dto.FacetResultDTO

FacetResultDTO() - Constructor for class au.org.ala.biocache.dto.FacetResultDTO

Default constructor

facets - Variable in class au.org.ala.biocache.dto.SearchRequestParams

The facets to be included by the search Initialised with the default facets to use

facetsMap - Static variable in class au.org.ala.biocache.dto.FacetThemes

FacetThemes - Class in au.org.ala.biocache.dto

This class provides thematic grouping of facets to aid rendering in UIs.

FacetThemes(String) - Constructor for class au.org.ala.biocache.dto.FacetThemes

Takes a file path to a configuration file in JSON and parses the file into facets and facet themes.

FacetThemes() - Constructor for class au.org.ala.biocache.dto.FacetThemes

FacetThemes.Facet - Class in au.org.ala.biocache.dto

family - Variable in class au.org.ala.biocache.dto.TaxaCountDTO

FieldResultDTO - Class in au.org.ala.biocache.dto

A DTO bean that represents a single (facet) field result (SOLR)

FieldResultDTO(String, long, String) - Constructor for class au.org.ala.biocache.dto.FieldResultDTO

Constructor

FieldResultDTO(String, long) - Constructor for class au.org.ala.biocache.dto.FieldResultDTO

Constructor

FieldResultDTO() - Constructor for class au.org.ala.biocache.dto.FieldResultDTO

Default constructor

fields - Variable in class au.org.ala.biocache.dto.DownloadRequestParams

CSV list of fields that should be downloaded.

file - Variable in class au.org.ala.biocache.dto.DownloadRequestParams

filePath - Variable in class au.org.ala.biocache.dto.MediaDTO

fileType - Variable in class au.org.ala.biocache.dto.DownloadRequestParams

filterByMaxColumnLengths(String[], CSVReader, int) - Method in class au.org.ala.biocache.web.UploadController

filterCustomIndexFields(List<String>) - Method in class au.org.ala.biocache.web.UploadController

finalise() - Method in class au.org.ala.biocache.writer.CSVRecordWriter

finalise() - Method in class au.org.ala.biocache.writer.ShapeFileRecordWriter

Indicates that the download has completed and the shape file should be generated and written to the supplied output stream.

findAllSpecies(SpatialSearchRequestParams) - Method in interface au.org.ala.biocache.dao.SearchDAO

Find all species (and counts) for a given query.

findAllSpecies(SpatialSearchRequestParams) - Method in class au.org.ala.biocache.dao.SearchDAOImpl

findAllSpeciesByCircleAreaAndHigherTaxa(SpatialSearchRequestParams, String) - Method in interface au.org.ala.biocache.dao.SearchDAO

Find all species (and counts) for a given location search (lat/long and radius) and a higher taxon (with rank)

findAllSpeciesByCircleAreaAndHigherTaxa(SpatialSearchRequestParams, String) - Method in class au.org.ala.biocache.dao.SearchDAOImpl

findByFulltext(SpatialSearchRequestParams) - Method in interface au.org.ala.biocache.dao.SearchDAO

Find all occurrences for a given query as SolrDocumentList

findByFulltext(SpatialSearchRequestParams) - Method in class au.org.ala.biocache.dao.SearchDAOImpl

findByFulltextSpatialQuery(SpatialSearchRequestParams, Map<String, String[]>) - Method in interface au.org.ala.biocache.dao.SearchDAO

Find all occurrences for a given (full text) query, latitude, longitude & radius (km).

findByFulltextSpatialQuery(SpatialSearchRequestParams, boolean, Map<String, String[]>) - Method in interface au.org.ala.biocache.dao.SearchDAO

Find all occurrences for a given (full text) query, latitude, longitude & radius (km).

findByFulltextSpatialQuery(SpatialSearchRequestParams, Map<String, String[]>) - Method in class au.org.ala.biocache.dao.SearchDAOImpl

findByFulltextSpatialQuery(SpatialSearchRequestParams, boolean, Map<String, String[]>) - Method in class au.org.ala.biocache.dao.SearchDAOImpl

findRecordByStateFor(String) - Method in interface au.org.ala.biocache.dao.SearchDAO

findRecordByStateFor(String) - Method in class au.org.ala.biocache.dao.SearchDAOImpl

findRecordsForLocation(SpatialSearchRequestParams, PointType) - Method in interface au.org.ala.biocache.dao.SearchDAO

Get a list of occurrence points for a given lat/long and distance (radius)

findRecordsForLocation(SpatialSearchRequestParams, PointType) - Method in class au.org.ala.biocache.dao.SearchDAOImpl

findTaxonCountForUid(BreakdownRequestParams, String) - Method in interface au.org.ala.biocache.dao.SearchDAO

Returns the scientific name and counts for the taxon rank that proceed or include the supplied rank.

findTaxonCountForUid(BreakdownRequestParams, String) - Method in class au.org.ala.biocache.dao.SearchDAOImpl

Deprecated.

use SearchDAOImpl.calculateBreakdown(BreakdownRequestParams) instead

fl - Variable in class au.org.ala.biocache.dto.SearchRequestParams

flimit - Variable in class au.org.ala.biocache.dto.SearchRequestParams

foffset - Variable in class au.org.ala.biocache.dto.SearchRequestParams

The offset of facets to return.

formatDisplayStringWithI18n(String) - Method in class au.org.ala.biocache.dao.SearchDAOImpl

Substitute with i18n properties

formatDynamicFieldName(String) - Static method in class au.org.ala.biocache.util.SearchUtils

formatGuid(String) - Static method in class au.org.ala.biocache.util.SearchUtils

formatSearchQuery(SpatialSearchRequestParams) - Method in class au.org.ala.biocache.dao.SearchDAOImpl

formatSearchQuery(SpatialSearchRequestParams, boolean) - Method in class au.org.ala.biocache.dao.SearchDAOImpl

Format the search input query for a full-text search.

formatSearchQuery(String) - Static method in class au.org.ala.biocache.util.SearchUtils

Formats the query string before

formattedQuery - Variable in class au.org.ala.biocache.dto.SearchRequestParams

fprefix - Variable in class au.org.ala.biocache.dto.SearchRequestParams

The prefix to limit facet values

fq - Variable in class au.org.ala.biocache.dto.SearchRequestParams

fsort - Variable in class au.org.ala.biocache.dto.SearchRequestParams

The sort order in which to return the facets.

G

generateClasses(double[]) - Method in class au.org.ala.biocache.heatmap.HeatMap

Generate classes

generatePoints(double[], Color) - Method in class au.org.ala.biocache.heatmap.HeatMap

generatePublicationMap(SpatialSearchRequestParams, String, String, Double, Double, Integer, String, Double, String, String, Integer, boolean, String, String, HttpServletRequest, HttpServletResponse) - Method in class au.org.ala.biocache.web.WMSController

Method that produces the downloadable map integrated in AVH/OZCAM/Biocache.

generateShapeHeader(String[]) - Static method in class au.org.ala.biocache.util.AlaFileUtils

Generates a map of feature names to original headers.

generateStaticHeatmapImages(SpatialSearchRequestParams, boolean, boolean, Integer, String, String[], String[], Float, HttpServletRequest) - Method in class au.org.ala.biocache.web.MapController

Generate heatmap image (and associated legend if applicable)

generateStylesForPoints() - Method in class au.org.ala.biocache.web.WMSController

generateWmsTile(SpatialSearchRequestParams, String, String, String, String, String, Integer, Integer, String, String, boolean, String, String, String[], HttpServletRequest, HttpServletResponse) - Method in class au.org.ala.biocache.web.WMSController

WMS service for webportal.

geoserverUrl - Variable in class au.org.ala.biocache.web.WMSController

GeospatialController - Class in au.org.ala.biocache.web

Geospatial controller for the biocache services.

GeospatialController() - Constructor for class au.org.ala.biocache.web.GeospatialController

get(long) - Static method in class au.org.ala.biocache.util.ParamsCache

Retrive search parameter object

get(int) - Static method in enum au.org.ala.biocache.util.SearchUtils.Month

get(String, String, PointType) - Static method in class au.org.ala.biocache.util.WMSCache

Retrieve search parameter object

getAcceptedNameForGuid(String) - Method in class au.org.ala.biocache.service.SpeciesLookupIndexService

getAcceptedNameForGuid(String) - Method in class au.org.ala.biocache.service.SpeciesLookupRestService

Lookup the accepted name for a GUID

getAcceptedNameForGuid(String) - Method in interface au.org.ala.biocache.service.SpeciesLookupService

Lookup the accepted name for a GUID

getActiveFacetMap() - Method in class au.org.ala.biocache.dto.SearchResultDTO

getAlaUserName() - Method in class au.org.ala.biocache.dto.OccurrenceDTO

getAllDownloads() - Method in class au.org.ala.biocache.dao.JsonPersistentQueueDAOImpl

getAllDownloads() - Method in interface au.org.ala.biocache.dao.PersistentQueueDAO

Returns a list of all the offline downloads in the order in which they were requested.

getAllMimeTypes() - Static method in enum au.org.ala.biocache.util.MimeType

Retrieve a list of all mime types.

getAlternativeFormats() - Method in class au.org.ala.biocache.dto.MediaDTO

getApi_key() - Method in class au.org.ala.biocache.web.UserUpload

getApiKey() - Method in class au.org.ala.biocache.dto.ValidationRuleDTO

getArea() - Method in class au.org.ala.biocache.dto.ValidationRuleDTO

getAssertion(String, String, HttpServletResponse) - Method in class au.org.ala.biocache.web.AssertionController

Get single assertion

getAssertions() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getAssertions(String) - Method in class au.org.ala.biocache.web.AssertionController

Get user assertions

getAssertionWithParams(String, String, HttpServletResponse) - Method in class au.org.ala.biocache.web.AssertionController

getAssociatedEntityUid() - Method in class au.org.ala.biocache.dto.ContactDTO

getAustConservation() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getAuthIndexFields() - Method in class au.org.ala.biocache.dao.SearchDAOImpl

getAuthority() - Method in class au.org.ala.biocache.dto.ValidationUserDTO

getBasisOfRecord() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getBbox() - Method in class au.org.ala.biocache.util.ParamsCacheObject

getBbox() - Method in class au.org.ala.biocache.util.WMSTile

getBlue() - Method in class au.org.ala.biocache.util.LegendItem

getCached() - Method in class au.org.ala.biocache.util.WMSTile

getCapabilities(SpatialSearchRequestParams, String, String, String, String, String, String, Integer, Integer, String, String, boolean, String, String, String, String[], Double, Double, boolean, boolean, boolean, boolean, boolean, HttpServletRequest, HttpServletResponse, Model) - Method in class au.org.ala.biocache.web.WMSController

Returns a get capabilities response by default.

getChildGroups() - Method in class au.org.ala.biocache.dto.SpeciesGroupDTO

getCitations(Map<String, Integer>, OutputStream, char, char) - Method in class au.org.ala.biocache.service.DownloadService

get citation info from citation web service and write it into citation.txt file.

getClassification() - Method in class au.org.ala.biocache.dto.ValidationRuleDTO

getClasss() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getCodesMap(CollectionsCache.ResourceType, List<String>) - Method in class au.org.ala.biocache.util.CollectionsCache

Do the web services call.

getCollectionName() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getCollections() - Method in class au.org.ala.biocache.util.CollectionsCache

getCollectionUid() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getCollector() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getCollectors() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getColor(String, Float) - Static method in class au.org.ala.biocache.util.ColorUtil

Translates a "ff0000" html color into an AWT color.

getColour() - Method in class au.org.ala.biocache.util.LegendItem

getColourmode() - Method in class au.org.ala.biocache.util.WMSTile

getColours() - Method in class au.org.ala.biocache.util.WMSTile

getComment() - Method in class au.org.ala.biocache.dto.ValidationRuleDTO

getCommonName() - Method in class au.org.ala.biocache.dto.MiniTaxonConceptDTO

getCommonName() - Method in class au.org.ala.biocache.dto.TaxaCountDTO

getConsensus() - Method in class au.org.ala.biocache.dto.OccurrenceDTO

getContactForEmailAndUid(String, String) - Method in class au.org.ala.biocache.util.ContactUtils

Return contact details for this user if they are a collection manager etc

getContactsForUID(String) - Method in class au.org.ala.biocache.util.ContactUtils

Retrieve a list of contacts for this UID.

getContentType() - Method in class au.org.ala.biocache.dto.MediaDTO

getCoordinates() - Method in class au.org.ala.biocache.dto.OccurrencePoint

getCoordinateUncertaintyInMeters() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getCount() - Method in class au.org.ala.biocache.dto.DataProviderCountDTO

getCount() - Method in class au.org.ala.biocache.dto.FacetResultDTO

getCount() - Method in class au.org.ala.biocache.dto.FieldResultDTO

getCount() - Method in class au.org.ala.biocache.dto.MiniTaxonConceptDTO

getCount() - Method in class au.org.ala.biocache.dto.OccurrencePoint

getCount() - Method in class au.org.ala.biocache.dto.OccurrenceSourceDTO

getCount() - Method in class au.org.ala.biocache.dto.SpeciesGroupDTO

getCount() - Method in class au.org.ala.biocache.dto.TaxaCountDTO

getCount() - Method in class au.org.ala.biocache.util.LegendItem

getCountry() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getCounts() - Method in class au.org.ala.biocache.util.WMSTile

getCreated() - Method in class au.org.ala.biocache.util.WMSTile

getCurrentDownloads() - Method in class au.org.ala.biocache.service.DownloadService

Returns a list of current downloads

getCurrentDownloads() - Method in class au.org.ala.biocache.web.DownloadController

Retrieves all the downloads that are on the queue

getCurrentDownloads() - Method in class au.org.ala.biocache.web.OccurrenceController

getCurrentPage() - Method in class au.org.ala.biocache.dto.SearchResultDTO

getDataHub() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getDataHubs() - Method in class au.org.ala.biocache.util.CollectionsCache

getDataHubUid() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getDataProviderCounts() - Method in interface au.org.ala.biocache.dao.SearchDAO

Find all the data providers with records.

getDataProviderCounts() - Method in class au.org.ala.biocache.dao.SearchDAOImpl

http://ala-biocache1.vm.csiro.au:8080/solr/select?q=*:*&rows=0&facet=true&facet.field=data_provider_id&facet.field=data_provider&facet.sort=data_provider_id

getDataProviderList(SpatialSearchRequestParams) - Method in interface au.org.ala.biocache.dao.SearchDAO

Get a data provider list for a query.

getDataProviderList(SpatialSearchRequestParams) - Method in class au.org.ala.biocache.dao.SearchDAOImpl

getDataProviderName() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getDataProviders() - Method in class au.org.ala.biocache.util.CollectionsCache

getDataProviderUid() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getDataResourceName() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getDataResources() - Method in class au.org.ala.biocache.util.CollectionsCache

getDataResourceUid() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getDataType() - Method in class au.org.ala.biocache.dto.IndexFieldDTO

getDataType() - Method in class au.org.ala.biocache.dto.StatsIndexFieldDTO

getDecimalLatitude() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getDecimalLongitude() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getDeleteOccurrences(String, HttpServletResponse) - Method in class au.org.ala.biocache.web.OccurrenceController

Returns the records uuids that have been deleted since the fromDate inclusive.

getDescription() - Method in class au.org.ala.biocache.dto.IndexFieldDTO

getDir() - Method in class au.org.ala.biocache.dto.SearchRequestParams

Get the value of dir

getDir() - Method in class au.org.ala.biocache.dto.SearchResultDTO

getDisplayName() - Method in class au.org.ala.biocache.dto.ContactDTO

getDisplayName() - Method in class au.org.ala.biocache.dto.Facet

getDisplayName() - Method in enum au.org.ala.biocache.dto.OccurrenceSource

getDisplayNameFor(String) - Method in class au.org.ala.biocache.service.AuthService

Returns the display name to be used by a client.

getDisplayString() - Method in class au.org.ala.biocache.dto.SearchQuery

getDisplayString() - Method in class au.org.ala.biocache.dto.SearchRequestParams

getDisplayString() - Method in class au.org.ala.biocache.util.ParamsCacheObject

getDownloadLimits() - Method in class au.org.ala.biocache.util.CollectionsCache

getDownloadParams() - Method in class au.org.ala.biocache.dto.DownloadDetailsDTO

getDownloadType() - Method in class au.org.ala.biocache.dto.DownloadDetailsDTO

getDuplicateStats(String) - Method in class au.org.ala.biocache.web.DuplicationController

Retrieves the duplication information for the supplied guid.

getEmail() - Method in class au.org.ala.biocache.dto.ContactDTO

getEmail() - Method in class au.org.ala.biocache.dto.DownloadDetailsDTO

getEmail() - Method in class au.org.ala.biocache.dto.DownloadRequestParams

getEmail() - Method in class au.org.ala.biocache.dto.ValidationUserDTO

getEmail() - Method in class au.org.ala.biocache.web.UserUpload

getEncodedParams() - Method in class au.org.ala.biocache.dto.SearchRequestParams

Produce a URI encoded query string for use in java.util.URI, etc

getEncodedParams() - Method in class au.org.ala.biocache.dto.SpatialSearchRequestParams

Produce a URI encoded query string for use in java.util.URI, etc

getEnd() - Method in class au.org.ala.biocache.dto.StatsIndexFieldDTO

getEndemicSpecies(SpatialSearchRequestParams) - Method in interface au.org.ala.biocache.dao.SearchDAO

Finds the endemic species of the supplied area.

getEndemicSpecies(SpatialSearchRequestParams) - Method in class au.org.ala.biocache.dao.SearchDAOImpl

Returns a list of species that are endemic to the supplied region.

getEndemicSpeciesCSV(SpatialSearchRequestParams, HttpServletResponse) - Method in class au.org.ala.biocache.web.ExploreController

Returns the species that only have occurrences in the supplied WKT.

getEntities(LoggerRestService.LoggerType) - Method in class au.org.ala.biocache.service.LoggerRestService

Get a list of entities for the given LoggerType

getEntityQuery() - Method in class au.org.ala.biocache.dto.SearchQuery

getErrorMessage() - Method in class au.org.ala.biocache.dto.SearchResultDTO

getEsc() - Method in class au.org.ala.biocache.dto.DownloadRequestParams

getEventDate() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getExtra() - Method in class au.org.ala.biocache.dto.DownloadRequestParams

getExtraParams(Map) - Static method in class au.org.ala.biocache.util.SearchUtils

getFacet(SpatialSearchRequestParams, String) - Method in class au.org.ala.biocache.dao.SearchDAOImpl

getFacet() - Method in class au.org.ala.biocache.dto.SearchRequestParams

getFacetCounts(SpatialSearchRequestParams) - Method in interface au.org.ala.biocache.dao.SearchDAO

Retrieve facet counts for this query

getFacetCounts(SpatialSearchRequestParams) - Method in class au.org.ala.biocache.dao.SearchDAOImpl

Returns the count of distinct values for the facets.

getFacetPoints(SpatialSearchRequestParams, PointType) - Method in interface au.org.ala.biocache.dao.SearchDAO

Retrieve an OccurrencePoint (distinct list of points - lat-long to 4 decimal places) for a given search

getFacetPoints(SpatialSearchRequestParams, PointType) - Method in class au.org.ala.biocache.dao.SearchDAOImpl

getFacetResults() - Method in class au.org.ala.biocache.dto.SearchResultDTO

getFacets() - Method in class au.org.ala.biocache.dto.SearchRequestParams

getFamily() - Method in class au.org.ala.biocache.dto.MiniTaxonConceptDTO

getFamily() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getFamily() - Method in class au.org.ala.biocache.dto.TaxaCountDTO

getFeatureInfo(String, String, String, Integer, Integer, String, String, String, Double, Double, HttpServletRequest, HttpServletResponse, Model) - Method in class au.org.ala.biocache.web.WMSController

getField() - Method in class au.org.ala.biocache.dto.FacetThemes.Facet

getFieldName() - Method in class au.org.ala.biocache.dto.FacetResultDTO

getFieldResult() - Method in class au.org.ala.biocache.dto.FacetResultDTO

getFields() - Method in class au.org.ala.biocache.dto.DownloadRequestParams

getFields() - Method in class au.org.ala.biocache.util.DownloadFields

Get the name of the field that should be included in the download.

getFieldValue() - Method in class au.org.ala.biocache.dto.FieldResultDTO

getFile() - Method in class au.org.ala.biocache.dto.DownloadRequestParams

getFileExtension(String) - Static method in enum au.org.ala.biocache.util.MimeType

Get file extension, returning an empty string if unknown for supplied mime type.

getFileExtensions() - Method in enum au.org.ala.biocache.util.MimeType

getFileLocation() - Method in class au.org.ala.biocache.dto.DownloadDetailsDTO

getFilePath() - Method in class au.org.ala.biocache.dto.MediaDTO

getFileType() - Method in class au.org.ala.biocache.dto.DownloadRequestParams

getFilterQuery() - Method in class au.org.ala.biocache.dto.SearchQuery

getFirstName() - Method in class au.org.ala.biocache.web.UserUpload

getFl() - Method in class au.org.ala.biocache.dto.SearchRequestParams

getFlimit() - Method in class au.org.ala.biocache.dto.SearchRequestParams

getFoffset() - Method in class au.org.ala.biocache.dto.SearchRequestParams

getForDisplayName(String) - Static method in enum au.org.ala.biocache.dto.OccurrenceSource

getForFileExtension(String) - Static method in enum au.org.ala.biocache.util.MimeType

Lookup method for mimetype string

getFormattedQuery() - Method in class au.org.ala.biocache.dto.SearchRequestParams

getForMimeType(String) - Static method in enum au.org.ala.biocache.util.MimeType

Lookup method for mimetype string

getForRange(String) - Static method in enum au.org.ala.biocache.dto.OccurrenceSource

getFprefix() - Method in class au.org.ala.biocache.dto.SearchRequestParams

getFq() - Method in class au.org.ala.biocache.dto.FieldResultDTO

getFq() - Method in class au.org.ala.biocache.dto.SearchRequestParams

Get the value of fq

getFq() - Method in class au.org.ala.biocache.dto.SpatialSearchRequestParams

Get the value of fq.

getFq() - Method in class au.org.ala.biocache.util.LegendItem

getFqs() - Method in class au.org.ala.biocache.util.ParamsCacheObject

getFsort() - Method in class au.org.ala.biocache.dto.SearchRequestParams

getGap() - Method in class au.org.ala.biocache.dto.StatsIndexFieldDTO

getGenus() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getGenusGuid() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getGeospatialKosher() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getGk() - Method in class au.org.ala.biocache.dto.SpatialSearchRequestParams

getGreen() - Method in class au.org.ala.biocache.util.LegendItem

getGuid() - Method in class au.org.ala.biocache.dto.MiniTaxonConceptDTO

getGuid() - Method in class au.org.ala.biocache.dto.TaxaCountDTO

getGuidForName(String) - Method in class au.org.ala.biocache.service.SpeciesLookupIndexService

getGuidForName(String) - Method in class au.org.ala.biocache.service.SpeciesLookupRestService

getGuidForName(String) - Method in interface au.org.ala.biocache.service.SpeciesLookupService

Lookup a GUID for a given scientific name (returns best match/accepted concept)

getHasUserAssertions() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getHeader(String[], boolean) - Method in class au.org.ala.biocache.util.DownloadFields

Gets the header for the file

getHeaderDetails(String, boolean, boolean) - Method in class au.org.ala.biocache.service.SpeciesLookupIndexService

getHeaderDetails(String, boolean, boolean) - Method in class au.org.ala.biocache.service.SpeciesLookupRestService

getHeaderDetails(String, boolean, boolean) - Method in interface au.org.ala.biocache.service.SpeciesLookupService

Returns the header fields to use based on the species lookup service.

getHeaderMap() - Method in class au.org.ala.biocache.dto.DownloadDetailsDTO

getHeaderMappings() - Method in class au.org.ala.biocache.writer.ShapeFileRecordWriter

getHeaders(HttpServletRequest) - Method in class au.org.ala.biocache.web.UploadController

getHierarchy(HttpServletResponse) - Method in class au.org.ala.biocache.web.ExploreController

getHost() - Method in class au.org.ala.biocache.service.EmailService

getIbra() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getId() - Method in class au.org.ala.biocache.dto.DataProviderCountDTO

getId() - Method in class au.org.ala.biocache.dto.ValidationRuleDTO

getIdList(List<Map<String, Object>>) - Method in class au.org.ala.biocache.service.LoggerRestService

Generates an id list from the supplied list

getIgnored() - Method in class au.org.ala.biocache.dto.ValidationRuleDTO

getImage() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getImageMetadata() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getImageMetadataForOccurrences(List<String>) - Method in class au.org.ala.biocache.service.AlaImageMetadataService

getImageMetadataForOccurrences(List<String>) - Method in interface au.org.ala.biocache.service.ImageMetadataService

Returns the metadata for all images associated with the supplied list of occurrences

getImageMimeTypes() - Static method in enum au.org.ala.biocache.util.MimeType

Retrieve a list of image mime types supported.

getImages() - Method in class au.org.ala.biocache.dto.OccurrenceDTO

getImages() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getImages(String) - Method in class au.org.ala.biocache.web.OccurrenceController

Returns a list of image urls for the supplied taxon guid.

getImageThumbnailUrl() - Method in class au.org.ala.biocache.dto.MiniTaxonConceptDTO

getImageUrl() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getImageUrls() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getImcra() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getIncludeSensitive() - Method in class au.org.ala.biocache.dto.DownloadDetailsDTO

getIndexedFields() - Method in interface au.org.ala.biocache.dao.SearchDAO

Retrieve a list of the indexed fields.

getIndexedFields() - Method in class au.org.ala.biocache.dao.SearchDAOImpl

Returns details about the fields in the index.

getIndexedFields(String) - Method in class au.org.ala.biocache.web.OccurrenceController

Returns a list with the details of the index field

getIndexFieldDetails(String...) - Method in interface au.org.ala.biocache.dao.SearchDAO

Returns the up to date statistics for the supplied field

getIndexFieldDetails(String...) - Method in class au.org.ala.biocache.dao.SearchDAOImpl

Gets the details about the SOLR fields using the LukeRequestHandler: See http://wiki.apache.org/solr/LukeRequestHandler for more information

getIndexFields(String[]) - Method in class au.org.ala.biocache.util.DownloadFields

Returns the index fields that are used for the supplied values.

getInstitutionName() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getInstitutions() - Method in class au.org.ala.biocache.util.CollectionsCache

Get the institutions

getInstitutionUid() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getInverseWKT(String) - Static method in class au.org.ala.biocache.util.SpatialUtils

Deprecated.

No longer necessary because the SOLR spatial support negated areas in the query.

getIpAddress() - Method in class au.org.ala.biocache.dto.DownloadDetailsDTO

getIsAdmin() - Method in class au.org.ala.biocache.dto.ValidationUserDTO

getIsAustralian() - Method in class au.org.ala.biocache.dto.NativeDTO

getIsNSL() - Method in class au.org.ala.biocache.dto.NativeDTO

getJackKnifeStats(String) - Method in class au.org.ala.biocache.web.OutlierController

Checks to see if the supplied GUID represents an Australian species.

getKey(String, String, PointType) - Static method in class au.org.ala.biocache.util.WMSCache

cache key built from query, colourmode and point type.

getKingdom() - Method in class au.org.ala.biocache.dto.MiniTaxonConceptDTO

getKingdom() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getKingdom() - Method in class au.org.ala.biocache.dto.TaxaCountDTO

getLabel() - Method in class au.org.ala.biocache.dto.FieldResultDTO

getLabel() - Method in enum au.org.ala.biocache.dto.PointType

getLargeImageUrl() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getLargestCacheableSize() - Static method in class au.org.ala.biocache.util.ParamsCache

getLargestCacheableSize() - Static method in class au.org.ala.biocache.util.WMSCache

getLastModified() - Method in class au.org.ala.biocache.dto.ValidationRuleDTO

getLastName() - Method in class au.org.ala.biocache.web.UserUpload

getLastUpdate() - Method in class au.org.ala.biocache.dto.DownloadDetailsDTO

getLastUse() - Method in class au.org.ala.biocache.util.ParamsCacheObject

getLastUse() - Method in class au.org.ala.biocache.util.WMSTile

getLat() - Method in class au.org.ala.biocache.dto.SpatialSearchRequestParams

getLatLong() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getLayerId() - Method in class au.org.ala.biocache.dto.OutlierInfo

getLayerNameMap() - Method in class au.org.ala.biocache.service.AlaLayersService

getLayerNameMap() - Method in interface au.org.ala.biocache.service.LayersService

Retrieve a map of layers

getLeft() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getLegend(SpatialSearchRequestParams, String, String[]) - Method in interface au.org.ala.biocache.dao.SearchDAO

Get legend items for a query and specified facet.

getLegend(SpatialSearchRequestParams, String, String[]) - Method in class au.org.ala.biocache.dao.SearchDAOImpl

getLegendGraphic(String, String, Integer, Integer, HttpServletRequest, HttpServletResponse) - Method in class au.org.ala.biocache.web.WMSController

getLevel() - Method in class au.org.ala.biocache.dto.BreakdownRequestParams

getLevel() - Method in class au.org.ala.biocache.dto.SpeciesGroupDTO

getLga() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getLon() - Method in class au.org.ala.biocache.dto.SpatialSearchRequestParams

getMapOfAllUserNamesById() - Method in class au.org.ala.biocache.service.AuthService

getMapOfAllUserNamesByNumericId() - Method in class au.org.ala.biocache.service.AuthService

getMapOfEmailToId() - Method in class au.org.ala.biocache.service.AuthService

getMax() - Method in class au.org.ala.biocache.dto.BreakdownRequestParams

getMax() - Method in class au.org.ala.biocache.dto.OutlierInfo

getMaxCacheSize() - Static method in class au.org.ala.biocache.util.ParamsCache

getMaxCacheSize() - Static method in class au.org.ala.biocache.util.WMSCache

getMaxFileAge() - Static method in class au.org.ala.biocache.util.ParamsCache

getMaxMultiPartThreads() - Method in class au.org.ala.biocache.dao.SearchDAOImpl

getMean() - Method in class au.org.ala.biocache.dto.OutlierInfo

getMetadata(String, String, HttpServletRequest, HttpServletResponse, Model) - Method in class au.org.ala.biocache.web.WMSController

getMimeType() - Method in enum au.org.ala.biocache.util.MimeType

getMin() - Method in class au.org.ala.biocache.dto.OutlierInfo

getMinCacheSize() - Static method in class au.org.ala.biocache.util.ParamsCache

getMinCacheSize() - Static method in class au.org.ala.biocache.util.WMSCache

getMonth() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getMultimedia() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getName() - Method in class au.org.ala.biocache.dto.BreakdownRequestParams

getName() - Method in class au.org.ala.biocache.dto.DataProviderCountDTO

getName() - Method in class au.org.ala.biocache.dto.Facet

getName() - Method in class au.org.ala.biocache.dto.IndexFieldDTO

getName() - Method in class au.org.ala.biocache.dto.OccurrenceSourceDTO

getName() - Method in class au.org.ala.biocache.dto.SpeciesGroupDTO

getName() - Method in class au.org.ala.biocache.dto.TaxaCountDTO

getName(String) - Method in class au.org.ala.biocache.service.AlaLayersService

getName(String) - Method in interface au.org.ala.biocache.service.LayersService

Retrieve a layer name with the supplied code.

getName() - Method in class au.org.ala.biocache.util.LegendItem

getName() - Method in class au.org.ala.biocache.web.UserUpload

getNamesForGuids(List<String>) - Method in class au.org.ala.biocache.service.SpeciesLookupIndexService

getNamesForGuids(List<String>) - Method in class au.org.ala.biocache.service.SpeciesLookupRestService

getNamesForGuids(List<String>) - Method in interface au.org.ala.biocache.service.SpeciesLookupService

Lookup service for list of guids to names

getNamesLsid() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getNextDownload() - Method in class au.org.ala.biocache.dao.JsonPersistentQueueDAOImpl

getNextDownload() - Method in interface au.org.ala.biocache.dao.PersistentQueueDAO

Return the next offline download from the queue.

getNextRanks(String, boolean) - Method in class au.org.ala.biocache.util.SearchUtils

Returns an ordered list of the next ranks after the supplied rank.

getNumberDistinctValues() - Method in class au.org.ala.biocache.dto.IndexFieldDTO

getNumberOfRecords() - Method in class au.org.ala.biocache.web.UserUpload

getOccurrenceCountsForTaxa(List<String>) - Method in interface au.org.ala.biocache.dao.SearchDAO

Returns the occurrence counts based on lft and rgt values for each of the supplied taxa.

getOccurrenceCountsForTaxa(List<String>) - Method in class au.org.ala.biocache.dao.SearchDAOImpl

getOccurrenceDetails() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getOccurrenceFacetDetails(SpatialSearchRequestParams) - Method in class au.org.ala.biocache.web.OccurrenceController

Returns a facet list including the number of distinct values for a field

getOccurrenceID() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getOccurrences(SpatialSearchRequestParams, PointType, String, int) - Method in interface au.org.ala.biocache.dao.SearchDAO

Retrieve a list of occurrence uid's for a given search

getOccurrences(SpatialSearchRequestParams, PointType, String, int) - Method in class au.org.ala.biocache.dao.SearchDAOImpl

getOccurrences() - Method in class au.org.ala.biocache.dto.SearchResultDTO

getOccurrencesInformation(SpatialSearchRequestParams, Integer, String, Model, HttpServletResponse) - Method in class au.org.ala.biocache.web.MapController

getOccurrenceUid() - Method in class au.org.ala.biocache.dto.OccurrencePoint

getOccurrenceYear() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getOrder() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getOutlierForUUid(String) - Method in class au.org.ala.biocache.web.OutlierController

Checks to see if the supplied GUID represents an Australian species.

getOutlierValues() - Method in class au.org.ala.biocache.dto.OutlierInfo

getPageSize() - Method in class au.org.ala.biocache.dto.SearchRequestParams

Get the value of pageSize

getPageSize() - Method in class au.org.ala.biocache.dto.SearchResultDTO

getParamCacheObject(Long) - Method in class au.org.ala.biocache.web.WMSController

Allows the details of a cached query to be viewed.

getParamCacheObjectFromQuery(String) - Static method in class au.org.ala.biocache.util.ParamsCache

Retrieves the ParamsCacheObject based on the supplied query string.

getPhone() - Method in class au.org.ala.biocache.dto.ContactDTO

getPhotographer() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getPhylum() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getPoint00001() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getPoint0001() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getPoint001() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getPoint01() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getPoint1() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getPoints() - Method in class au.org.ala.biocache.util.WMSTile

getPointTypeForDegreesPerPixel(double) - Method in class au.org.ala.biocache.web.WMSController

Map a zoom level to a coordinate accuracy level

getPointTypeForZoomLevel(Integer) - Method in class au.org.ala.biocache.web.ExploreController

Map a zoom level to a coordinate accuracy level

getPointTypeForZoomLevel(Integer) - Method in class au.org.ala.biocache.web.MapController

Map a zoom level to a coordinate accuracy level

getPort() - Method in class au.org.ala.biocache.service.EmailService

getProcessed() - Method in class au.org.ala.biocache.dto.OccurrenceDTO

getQ() - Method in class au.org.ala.biocache.dto.SearchRequestParams

Get the value of q

getQ() - Method in class au.org.ala.biocache.util.ParamsCacheObject

getQa() - Method in class au.org.ala.biocache.dto.DownloadRequestParams

getQc() - Method in class au.org.ala.biocache.dto.SearchRequestParams

getQId() - Method in class au.org.ala.biocache.dto.SearchRequestParams

getQr() - Method in class au.org.ala.biocache.dto.SearchResultDTO

getQuery() - Method in class au.org.ala.biocache.dto.SearchQuery

getQuery() - Method in class au.org.ala.biocache.dto.SearchResultDTO

getQuery() - Method in class au.org.ala.biocache.dto.ValidationRuleDTO

getQuery() - Method in class au.org.ala.biocache.util.WMSTile

getQueryAssertions(String) - Method in class au.org.ala.biocache.util.AssertionUtils

getQueryContextAsArray(String) - Method in class au.org.ala.biocache.dao.SearchDAOImpl

getQueryTitle() - Method in class au.org.ala.biocache.dto.SearchResultDTO

getRadius() - Method in class au.org.ala.biocache.dto.SpatialSearchRequestParams

getRange() - Method in enum au.org.ala.biocache.dto.OccurrenceSource

getRange() - Method in class au.org.ala.biocache.dto.OutlierInfo

getRangeMap(String) - Static method in class au.org.ala.biocache.util.RangeBasedFacets

getRank() - Method in class au.org.ala.biocache.dto.BreakdownRequestParams

getRank() - Method in class au.org.ala.biocache.dto.MiniTaxonConceptDTO

getRank() - Method in class au.org.ala.biocache.dto.TaxaCountDTO

getRank() - Method in class au.org.ala.biocache.dto.TaxaRankCountDTO

getRankId() - Method in class au.org.ala.biocache.dto.MiniTaxonConceptDTO

getRanks() - Method in class au.org.ala.biocache.util.SearchUtils

getRaw() - Method in class au.org.ala.biocache.dto.OccurrenceDTO

getRaw_basisOfRecord() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getRaw_catalogNumber() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getRaw_collectionCode() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getRaw_countryCode() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getRaw_institutionCode() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getRaw_locationRemarks() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getRaw_occurrenceRemarks() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getRaw_scientificName() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getRaw_typeStatus() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getRaw_vernacularName() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getReason() - Method in class au.org.ala.biocache.dto.DownloadRequestParams

getReasonIds() - Method in class au.org.ala.biocache.service.LoggerRestService

getReasonIds() - Method in interface au.org.ala.biocache.service.LoggerService

getReasons() - Method in class au.org.ala.biocache.service.LoggerRestService

getReasons() - Method in interface au.org.ala.biocache.service.LoggerService

getReasonTypeId() - Method in class au.org.ala.biocache.dto.DownloadRequestParams

getRecordID() - Method in class au.org.ala.biocache.dto.OutlierInfo

getRecordLayerValue() - Method in class au.org.ala.biocache.dto.OutlierInfo

getRecordNumber() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getRecordsDownloaded() - Method in class au.org.ala.biocache.dto.DownloadDetailsDTO

getRed() - Method in class au.org.ala.biocache.util.LegendItem

getRequestParams() - Method in class au.org.ala.biocache.dto.DownloadDetailsDTO

getRight() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getRights() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getRole() - Method in class au.org.ala.biocache.dto.ContactDTO

getRowKey() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getSampleSize() - Method in class au.org.ala.biocache.dto.OutlierInfo

getScientificName() - Method in class au.org.ala.biocache.dto.MiniTaxonConceptDTO

getScientificName() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getSender() - Method in class au.org.ala.biocache.service.EmailService

getSensitive() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getSensitiveCoordinateUncertaintyInMeters() - Method in class au.org.ala.biocache.dto.SensitiveOccurrenceIndex

getSensitiveDecimalLatitude() - Method in class au.org.ala.biocache.dto.SensitiveOccurrenceIndex

getSensitiveDecimalLongitude() - Method in class au.org.ala.biocache.dto.SensitiveOccurrenceIndex

getSep() - Method in class au.org.ala.biocache.dto.DownloadRequestParams

getSize() - Method in class au.org.ala.biocache.util.ParamsCacheObject

get approximate size in bytes

getSize() - Method in class au.org.ala.biocache.util.WMSTile

getSmallImageUrl() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getSort() - Method in class au.org.ala.biocache.dto.FacetThemes.Facet

getSort() - Method in class au.org.ala.biocache.dto.SearchRequestParams

Get the value of sort

getSort() - Method in class au.org.ala.biocache.dto.SearchResultDTO

getSounds() - Method in class au.org.ala.biocache.dto.OccurrenceDTO

getSourceIds() - Method in class au.org.ala.biocache.service.LoggerRestService

getSourceIds() - Method in interface au.org.ala.biocache.service.LoggerService

getSourceInformation(Map<String, Integer>) - Method in class au.org.ala.biocache.util.SearchUtils

Returns the information for the supplied source keys

TODO: There may be a better location for this method.

getSources() - Method in class au.org.ala.biocache.service.LoggerRestService

getSources() - Method in interface au.org.ala.biocache.service.LoggerService

getSourcesForQuery(SpatialSearchRequestParams) - Method in interface au.org.ala.biocache.dao.SearchDAO

Find all the sources for the supplied query

getSourcesForQuery(SpatialSearchRequestParams) - Method in class au.org.ala.biocache.dao.SearchDAOImpl

Obtains a list and facet count of the source uids for the supplied query.

getSourceTypeId() - Method in class au.org.ala.biocache.dto.DownloadRequestParams

getSpecies() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getSpecies() - Method in class au.org.ala.biocache.dto.ValidationRuleDTO

getSpeciesCount() - Method in class au.org.ala.biocache.dto.SpeciesGroupDTO

getSpeciesCountOnlyInWKT(SpatialSearchRequestParams, HttpServletResponse) - Method in class au.org.ala.biocache.web.ExploreController

Returns the number of distinct species that are in the supplied region.

getSpeciesCounts(String, List<String>, List<String>, Integer, Integer, String, String) - Method in class au.org.ala.biocache.dao.SearchDAOImpl

Get a distinct list of species and their counts using a facet search

getSpeciesDetails(List<String>, List<Long>, boolean, boolean) - Method in class au.org.ala.biocache.service.SpeciesLookupIndexService

getSpeciesDetails(List<String>, List<Long>, boolean, boolean) - Method in class au.org.ala.biocache.service.SpeciesLookupRestService

getSpeciesDetails(List<String>, List<Long>, boolean, boolean) - Method in interface au.org.ala.biocache.service.SpeciesLookupService

Retrieves an list of arrays that contains the information that need to be included in the CSV details.

getSpeciesGroups() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getSpeciesGuid() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getSpeciesOnlyInWKT(SpatialSearchRequestParams, HttpServletResponse) - Method in class au.org.ala.biocache.web.ExploreController

Returns the species that only have occurrences in the supplied WKT.

getStart() - Method in class au.org.ala.biocache.dto.SearchRequestParams

Get the value of start

getStart() - Method in class au.org.ala.biocache.dto.StatsIndexFieldDTO

getStartDate() - Method in class au.org.ala.biocache.dto.DownloadDetailsDTO

getStartDateString() - Method in class au.org.ala.biocache.dto.DownloadDetailsDTO

getStartIndex() - Method in class au.org.ala.biocache.dto.SearchRequestParams

Set the value of start

getStartIndex() - Method in class au.org.ala.biocache.dto.SearchResultDTO

getStartTime() - Method in class au.org.ala.biocache.dto.DownloadDetailsDTO

getStateConservation() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getStateProvince() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getStatistics(SpatialSearchRequestParams) - Method in interface au.org.ala.biocache.dao.SearchDAO

Statistics for each of the fields included as facets.

getStatistics(SpatialSearchRequestParams) - Method in class au.org.ala.biocache.dao.SearchDAOImpl

getStats() - Method in class au.org.ala.biocache.dto.StatsIndexFieldDTO

getStatus() - Method in class au.org.ala.biocache.dto.SearchResultDTO

getStatus() - Method in class au.org.ala.biocache.dto.ValidationRuleDTO

getStdDev() - Method in class au.org.ala.biocache.dto.OutlierInfo

getSubspecies() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getSubspeciesGuid() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getSystemAssertions() - Method in class au.org.ala.biocache.dto.OccurrenceDTO

getTaxa() - Method in class au.org.ala.biocache.dto.TaxaRankCountDTO

getTaxonConceptGuid() - Method in class au.org.ala.biocache.dto.OccurrencePoint

getTaxonConceptID() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getTaxonGuid() - Method in class au.org.ala.biocache.dto.NativeDTO

getTaxonIDPattern() - Method in class au.org.ala.biocache.web.OccurrenceController

getTaxonomicKosher() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getTaxonRank() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getTaxonRankID() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getTaxonSearch(String) - Method in class au.org.ala.biocache.util.SearchUtils

Returns an array where the first value is the search string and the second is a display string.

getTempDataResources() - Method in class au.org.ala.biocache.util.CollectionsCache

getTempFilePath() - Static method in class au.org.ala.biocache.util.ParamsCache

getThreshold() - Method in class au.org.ala.biocache.dto.OutlierInfo

getThrottle() - Method in class au.org.ala.biocache.dao.SearchDAOImpl

getThumbnailUrl() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getTitleMap(String) - Static method in class au.org.ala.biocache.util.RangeBasedFacets

getTotalDownloads() - Method in class au.org.ala.biocache.dao.JsonPersistentQueueDAOImpl

getTotalDownloads() - Method in interface au.org.ala.biocache.dao.PersistentQueueDAO

Returns the total number of download that are on the queue

getTotalRecords() - Method in class au.org.ala.biocache.dto.DownloadDetailsDTO

getTotalRecords() - Method in class au.org.ala.biocache.dto.SearchResultDTO

getType() - Method in class au.org.ala.biocache.dto.OccurrencePoint

getType() - Method in class au.org.ala.biocache.dto.SearchQuery

getType() - Method in enum au.org.ala.biocache.util.CollectionsCache.ResourceType

getTypeStatus() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getUid() - Method in class au.org.ala.biocache.dto.OccurrenceSourceDTO

getUidDisplayString(String, String) - Method in class au.org.ala.biocache.util.SearchUtils

getUidDisplayString(String, String, boolean) - Method in class au.org.ala.biocache.util.SearchUtils

Returns the display string for the supplied uid

getUidSearchField(String) - Method in class au.org.ala.biocache.util.SearchUtils

returns the solr field that should be used to search for a particular uid

getUIDSearchString(String[]) - Method in class au.org.ala.biocache.util.SearchUtils

getUrlParameters() - Method in class au.org.ala.biocache.dto.SearchResultDTO

getUrlParams() - Method in class au.org.ala.biocache.dto.SearchRequestParams

Constructs the params to be returned in the result

getUrlParams() - Method in class au.org.ala.biocache.dto.SpatialSearchRequestParams

getUser() - Method in class au.org.ala.biocache.dto.ValidationRuleDTO

getUser() - Method in class au.org.ala.biocache.web.UserUpload

getUserAssertion(String, String) - Method in class au.org.ala.biocache.util.AssertionUtils

getUserAssertions() - Method in class au.org.ala.biocache.dto.OccurrenceDTO

getUserAssertions(String) - Method in class au.org.ala.biocache.util.AssertionUtils

Retrieve the user assertions adding additional metadata about users and attribution.

getUserAssertions(OccurrenceDTO) - Method in class au.org.ala.biocache.util.AssertionUtils

Retrieve the user assertions adding additional metadata about users and attribution.

getUserId() - Method in class au.org.ala.biocache.dto.ContactDTO

getUuid() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getValidationRule(String, HttpServletRequest) - Method in class au.org.ala.biocache.web.ValidationRuleController

getValidationRules() - Method in class au.org.ala.biocache.web.ValidationRuleController

getValidationRules(String, HttpServletRequest) - Method in class au.org.ala.biocache.web.ValidationRuleController

getValidationRules(String) - Method in class au.org.ala.biocache.web.ValidationRuleController

Returns a list of query assertions.

getValue() - Method in class au.org.ala.biocache.dto.Facet

getValue() - Method in enum au.org.ala.biocache.dto.PointType

getValuesForFacet(SpatialSearchRequestParams) - Method in interface au.org.ala.biocache.dao.SearchDAO

Retrieve a list of facet values for the supplied query.

getValuesForFacet(SpatialSearchRequestParams) - Method in class au.org.ala.biocache.dao.SearchDAOImpl

Returns the values and counts for a single facet field.

getVernacularName() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getVideo() - Method in class au.org.ala.biocache.dto.OccurrenceDTO

getWkt() - Method in class au.org.ala.biocache.dto.SpatialSearchRequestParams

getWkt() - Method in class au.org.ala.biocache.util.ParamsCacheObject

getWKTAsUnions(String) - Static method in class au.org.ala.biocache.util.SpatialUtils

Returns a GeometryCollection as a UNION of geometries

getWKTQuery(String, String, boolean) - Static method in class au.org.ala.biocache.util.SpatialUtils

Build up a WKT query.

getYear() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

getYourAreaCount(SpatialSearchRequestParams, String) - Method in class au.org.ala.biocache.web.ExploreController

Returns the number of records and distinct species in a particular species group

gk - Variable in class au.org.ala.biocache.dto.SpatialSearchRequestParams

groupFacets() - Method in class au.org.ala.biocache.web.OccurrenceController

Returns the default facets grouped by themes that are applied to a search

guessFieldTypes(HttpServletRequest, HttpServletResponse) - Method in class au.org.ala.biocache.web.ParserController

guessFieldTypesWithOriginal(HttpServletRequest, HttpServletResponse) - Method in class au.org.ala.biocache.web.ParserController

guid - Variable in class au.org.ala.biocache.dto.TaxaCountDTO

H

hashCode() - Method in class au.org.ala.biocache.dto.SearchRequestParams

hashCode() - Method in class au.org.ala.biocache.dto.SpatialSearchRequestParams

HeatMap - Class in au.org.ala.biocache.heatmap

HeatMap generator for species.

HeatMap() - Constructor for class au.org.ala.biocache.heatmap.HeatMap

heatmapOutputDir - Variable in class au.org.ala.biocache.web.MapController

homePageHandler(Model) - Method in class au.org.ala.biocache.web.OccurrenceController

Custom handler for the welcome view.

hostUrl - Variable in class au.org.ala.biocache.web.OccurrenceController

I

id - Variable in class au.org.ala.biocache.dto.DataProviderCountDTO

id - Variable in class au.org.ala.biocache.dto.ValidationRuleDTO

ignored - Variable in class au.org.ala.biocache.dto.ValidationRuleDTO

ImageMetadataService - Interface in au.org.ala.biocache.service

Provides the interface that services that support image metadata.

imageServiceUrl - Variable in class au.org.ala.biocache.service.AlaImageMetadataService

IndexFieldDTO - Class in au.org.ala.biocache.dto

DTO for the fields that belong to the index.

IndexFieldDTO() - Constructor for class au.org.ala.biocache.dto.IndexFieldDTO

indexFieldPatternMatcher - Variable in class au.org.ala.biocache.dao.SearchDAOImpl

ingestProcessingThreads - Variable in class au.org.ala.biocache.web.AdminController

ingestResources(HttpServletRequest, HttpServletResponse) - Method in class au.org.ala.biocache.web.AdminController

Ingests the list of supplied data resource uids.

init() - Method in class au.org.ala.biocache.dao.JsonPersistentQueueDAOImpl

init() - Method in class au.org.ala.biocache.service.DownloadService

init() - Method in class au.org.ala.biocache.service.EmailService

init(FilterConfig) - Method in class au.org.ala.biocache.web.LoggerConfigFilter

initBinder(WebDataBinder) - Method in class au.org.ala.biocache.web.OccurrenceController

Need to initialise the validator to be used otherwise the @Valid annotation will not work

initDecadeBasedFacet(SolrQuery, String) - Method in class au.org.ala.biocache.dao.SearchDAOImpl

initialize(LogType) - Method in class au.org.ala.biocache.validate.LogTypeValidator

initSolrQuery(SearchRequestParams, boolean, Map<String, String[]>) - Method in class au.org.ala.biocache.dao.SearchDAOImpl

Helper method to create SolrQuery object and add facet settings

institution_uid - Variable in class au.org.ala.biocache.util.CollectionsCache

institutions - Variable in class au.org.ala.biocache.util.CollectionsCache

isAdmin - Variable in class au.org.ala.biocache.dto.ValidationUserDTO

isAustralian(String) - Method in class au.org.ala.biocache.web.OccurrenceController

Checks to see if the supplied GUID represents an Australian species.

isCachable(WMSTile, int, boolean) - Static method in class au.org.ala.biocache.util.WMSCache

determine if a WMSTile created with the given characteristics will be too large for the cache.

isCacheable() - Method in class au.org.ala.biocache.util.WMSTile

isCollectionsAdmin(String, String) - Method in class au.org.ala.biocache.util.ContactUtils

isEnabled() - Static method in class au.org.ala.biocache.util.WMSCache

WMSCache is enabled

isFull() - Static method in class au.org.ala.biocache.util.WMSCache

Test if cache is full.

isHasCSOnly() - Method in class au.org.ala.biocache.dto.NativeDTO

isHasOccurrences() - Method in class au.org.ala.biocache.dto.NativeDTO

isIndexed() - Method in class au.org.ala.biocache.dto.IndexFieldDTO

isReadOnly() - Method in class au.org.ala.biocache.web.AdminController

Returns true when in service is in readonly mode.

isStored() - Method in class au.org.ala.biocache.dto.IndexFieldDTO

isValid(Integer, ConstraintValidatorContext) - Method in class au.org.ala.biocache.validate.LogTypeValidator

isValidKey(String) - Method in class au.org.ala.biocache.web.AbstractSecureController

Use a webservice to validate a key

J

jsonBoundingBox(SpatialSearchRequestParams, HttpServletResponse) - Method in class au.org.ala.biocache.web.WMSController

Get query bounding box as JSON array containing: min longitude, min latitude, max longitude, max latitude

JsonPersistentQueueDAOImpl - Class in au.org.ala.biocache.dao

A queue that stores the Downloads as JSON files in the supplied directory

JsonPersistentQueueDAOImpl() - Constructor for class au.org.ala.biocache.dao.JsonPersistentQueueDAOImpl

K

kingdom - Variable in class au.org.ala.biocache.dto.TaxaCountDTO

L

lastModified - Variable in class au.org.ala.biocache.dto.ValidationRuleDTO

lat - Variable in class au.org.ala.biocache.dto.SpatialSearchRequestParams

layersPattern - Variable in class au.org.ala.biocache.dao.SearchDAOImpl

layersService - Variable in class au.org.ala.biocache.dao.SearchDAOImpl

LayersService - Interface in au.org.ala.biocache.service

Provides access to the layers metadata information that could be of use elsewhere.

legend(SpatialSearchRequestParams, String, String, HttpServletRequest, HttpServletResponse) - Method in class au.org.ala.biocache.web.WMSController

Get legend for a query and facet field (colourMode).

LegendItem - Class in au.org.ala.biocache.util

Object representing a legend item.

LegendItem(String, long, String) - Constructor for class au.org.ala.biocache.util.LegendItem

level - Variable in class au.org.ala.biocache.dto.BreakdownRequestParams

limitBreakdown(BreakdownRequestParams, HttpServletResponse) - Method in class au.org.ala.biocache.web.BreakdownController

Performs a breakdown without limiting the collection or institution

listAllFacets() - Method in class au.org.ala.biocache.web.OccurrenceController

Returns the default facets that are applied to a search

listOccurrences(Model) - Method in class au.org.ala.biocache.web.OccurrenceController

Returns the complete list of Occurrences

listSpecies(SpatialSearchRequestParams) - Method in class au.org.ala.biocache.web.WMSController

JSON web service that returns a list of species and record counts for a given location search

listSpeciesCsv(SpatialSearchRequestParams, HttpServletResponse) - Method in class au.org.ala.biocache.web.WMSController

List of species for webportal as csv.

listSpeciesForHigherTaxa(SpatialSearchRequestParams, String, boolean, Model) - Method in class au.org.ala.biocache.web.ExploreController

JSON web service that returns a list of species and record counts for a given location search and a higher taxa with rank.

listWktOccurrences(SpatialSearchRequestParams, String, Model) - Method in class au.org.ala.biocache.web.GeospatialController

Performs an occurrence search based on wkt.

logger - Static variable in class au.org.ala.biocache.dto.OccurrenceIndex

LoggerConfigFilter - Class in au.org.ala.biocache.web

HTTP Request Filter to pass the user-agent request header to the ALA Logger Client so it can be included in posts to the logger service

LoggerConfigFilter() - Constructor for class au.org.ala.biocache.web.LoggerConfigFilter

LoggerRestService - Class in au.org.ala.biocache.service

Implementation of @see au.org.ala.biocache.service.LoggerService that performs lookup via HTTP GET to webservice.

LoggerRestService() - Constructor for class au.org.ala.biocache.service.LoggerRestService

LoggerRestService.LoggerType - Enum in au.org.ala.biocache.service

Enum for logger entity types

LoggerService - Interface in au.org.ala.biocache.service

Service for ALA logger NC 20130913: copied across from hubs-webapp so that we can cache log items on the server.

loggerUriPrefix - Variable in class au.org.ala.biocache.service.LoggerRestService

LogType - Annotation Type in au.org.ala.biocache.validate

The custom validation annotation to be used for Log Types.

LogTypeValidator - Class in au.org.ala.biocache.validate

A custom validator to validate values associated with the LoggerService.

LogTypeValidator() - Constructor for class au.org.ala.biocache.validate.LogTypeValidator

lon - Variable in class au.org.ala.biocache.dto.SpatialSearchRequestParams

lsidPattern - Variable in class au.org.ala.biocache.dao.SearchDAOImpl

M

main(String[]) - Static method in class au.org.ala.biocache.util.SpatialUtils

MapController - Class in au.org.ala.biocache.web

WMS and static map controller.

MapController() - Constructor for class au.org.ala.biocache.web.MapController

max - Variable in class au.org.ala.biocache.dto.BreakdownRequestParams

MAX_DOWNLOAD_SIZE - Variable in class au.org.ala.biocache.dao.SearchDAOImpl

Limit search results - for performance reasons

maxMultiPartThreads - Variable in class au.org.ala.biocache.dao.SearchDAOImpl

Max number of threads to use in endemic queries

MediaDTO - Class in au.org.ala.biocache.dto

DTO representing a media object.

MediaDTO() - Constructor for class au.org.ala.biocache.dto.MediaDTO

MimeType - Enum in au.org.ala.biocache.util

Enum class to store and retrieve mime-types

MiniTaxonConceptDTO - Class in au.org.ala.biocache.dto

Inner class/bean for transferring a few taxon concept properties into web page

MiniTaxonConceptDTO() - Constructor for class au.org.ala.biocache.dto.MiniTaxonConceptDTO

modifyServer(Boolean, Boolean) - Method in class au.org.ala.biocache.web.AdminController

Modifies the biocache-store: - reopen the index - enter/exit readonly mode.

N

name - Variable in class au.org.ala.biocache.dto.BreakdownRequestParams

name - Variable in class au.org.ala.biocache.dto.DataProviderCountDTO

name - Variable in class au.org.ala.biocache.dto.Facet

name - Variable in class au.org.ala.biocache.dto.TaxaCountDTO

nameIndexLocation - Variable in class au.org.ala.biocache.config.AppConfig

nameIndexLocation - Variable in class au.org.ala.biocache.service.SpeciesLookupIndexService

nameIndexLocation - Variable in class au.org.ala.biocache.util.SearchUtils

NAMES_AND_LSID - Static variable in class au.org.ala.biocache.dao.SearchDAOImpl

nativeCountry - Variable in class au.org.ala.biocache.web.OccurrenceController

NativeDTO - Class in au.org.ala.biocache.dto

DTO for the native information about a species.

NativeDTO() - Constructor for class au.org.ala.biocache.dto.NativeDTO

nearestOccurrence(SpatialSearchRequestParams) - Method in class au.org.ala.biocache.web.OccurrenceController

Utility method for retrieving a list of occurrences.

O

OccurrenceController - Class in au.org.ala.biocache.web

Occurrences controller for the biocache web services.

OccurrenceController() - Constructor for class au.org.ala.biocache.web.OccurrenceController

occurrenceDownload(DownloadRequestParams, String, String, String, HttpServletResponse, HttpServletRequest) - Method in class au.org.ala.biocache.web.DownloadController

Add a download to the offline queue

occurrenceDownload(DownloadRequestParams, BindingResult, String, String, Model, HttpServletResponse, HttpServletRequest) - Method in class au.org.ala.biocache.web.OccurrenceController

Occurrence search page uses SOLR JSON to display results Please NOTE that the q and fq provided to this URL should be obtained from SearchResultDTO.urlParameters

OccurrenceDTO - Class in au.org.ala.biocache.dto

Holds the Occurrence information about a specific occurrence from the biocache store

OccurrenceDTO() - Constructor for class au.org.ala.biocache.dto.OccurrenceDTO

OccurrenceDTO(FullRecord[]) - Constructor for class au.org.ala.biocache.dto.OccurrenceDTO

occurrenceGz(SpatialSearchRequestParams, HttpServletResponse) - Method in class au.org.ala.biocache.web.WMSController

Get occurrences by query as gzipped csv.

OccurrenceIndex - Class in au.org.ala.biocache.dto

A DTO representing an result from the search indexes.

OccurrenceIndex() - Constructor for class au.org.ala.biocache.dto.OccurrenceIndex

occurrenceIndexDownload(DownloadRequestParams, BindingResult, String, String, Model, HttpServletResponse, HttpServletRequest) - Method in class au.org.ala.biocache.web.OccurrenceController

OccurrencePoint - Class in au.org.ala.biocache.dto

Model object to store a list of occurrence coordinates

OccurrencePoint() - Constructor for class au.org.ala.biocache.dto.OccurrencePoint

OccurrencePoint(PointType) - Constructor for class au.org.ala.biocache.dto.OccurrencePoint

occurrences(SpatialSearchRequestParams, Model) - Method in class au.org.ala.biocache.web.WMSController

Get occurrences by query as JSON.

occurrenceSearch(SpatialSearchRequestParams, String, Boolean, HttpServletRequest, HttpServletResponse) - Method in class au.org.ala.biocache.web.OccurrenceController

Occurrence search page uses SOLR JSON to display results

occurrenceSearchByArea(SpatialSearchRequestParams, Model) - Method in class au.org.ala.biocache.web.OccurrenceController

Deprecated.

use OccurrenceController.occurrenceSearch(SpatialSearchRequestParams)

occurrenceSearchByTaxon(SpatialSearchRequestParams, String, Model) - Method in class au.org.ala.biocache.web.OccurrenceController

Occurrence search page uses SOLR JSON to display results

occurrenceSearchForUID(SpatialSearchRequestParams, String, Model) - Method in class au.org.ala.biocache.web.OccurrenceController

Occurrence search for a given collection, institution, data_resource or data_provider.

occurrenceSearchSensitive(SpatialSearchRequestParams, String, HttpServletRequest, HttpServletResponse) - Method in class au.org.ala.biocache.web.OccurrenceController

occurrenceSensitiveDownload(DownloadRequestParams, String, String, boolean, HttpServletResponse, HttpServletRequest) - Method in class au.org.ala.biocache.web.OccurrenceController

OccurrenceSource - Enum in au.org.ala.biocache.dto

Stores the details for the "SOURCES" facet information.

OccurrenceSourceDTO - Class in au.org.ala.biocache.dto

Stores the information about the source of an occurrence

OccurrenceSourceDTO() - Constructor for class au.org.ala.biocache.dto.OccurrenceSourceDTO

OccurrenceSourceDTO(String, String, int) - Constructor for class au.org.ala.biocache.dto.OccurrenceSourceDTO

occurrenceSpeciesCounts(HttpServletResponse, HttpServletRequest, String) - Method in class au.org.ala.biocache.web.OccurrenceController

Webservice to report the occurrence counts for the supplied list of taxa

occurrenceUid - Variable in class au.org.ala.biocache.dto.OccurrencePoint

oldApiHandler(Model) - Method in class au.org.ala.biocache.web.OccurrenceController

Custom handler for the welcome view.

optimiseIndex(HttpServletRequest, HttpServletResponse) - Method in class au.org.ala.biocache.web.AdminController

Optimises the SOLR index.

organizationName - Variable in class au.org.ala.biocache.web.WMSController

orgCity - Variable in class au.org.ala.biocache.web.WMSController

orgCountry - Variable in class au.org.ala.biocache.web.WMSController

orgEmail - Variable in class au.org.ala.biocache.web.WMSController

orgFax - Variable in class au.org.ala.biocache.web.WMSController

orgPhone - Variable in class au.org.ala.biocache.web.WMSController

orgPostcode - Variable in class au.org.ala.biocache.web.WMSController

orgStateProvince - Variable in class au.org.ala.biocache.web.WMSController

OutlierController - Class in au.org.ala.biocache.web

OutlierController() - Constructor for class au.org.ala.biocache.web.OutlierController

OutlierInfo - Class in au.org.ala.biocache.dto

Outlier details DTO.

OutlierInfo() - Constructor for class au.org.ala.biocache.dto.OutlierInfo

P

pageSize - Variable in class au.org.ala.biocache.dto.SearchRequestParams

ParamsCache - Class in au.org.ala.biocache.util

Manage cache of POST'ed search parameter q in memory and on disk.

ParamsCache() - Constructor for class au.org.ala.biocache.util.ParamsCache

ParamsCacheMissingException - Exception in au.org.ala.biocache.util

ParamsCacheMissingException(long) - Constructor for exception au.org.ala.biocache.util.ParamsCacheMissingException

ParamsCacheObject - Class in au.org.ala.biocache.util

An object representing a query.

ParamsCacheObject() - Constructor for class au.org.ala.biocache.util.ParamsCacheObject

ParamsCacheObject(long, String, String, String, double[], String[]) - Constructor for class au.org.ala.biocache.util.ParamsCacheObject

ParamsCacheSizeException - Exception in au.org.ala.biocache.util

ParamsCacheSizeException(long) - Constructor for exception au.org.ala.biocache.util.ParamsCacheSizeException

parse(InputStream) - Static method in class au.org.ala.biocache.web.GeospatialController

Constructs a Document object by reading from an input stream.

ParserController - Class in au.org.ala.biocache.web

This controller adhoc data parsing webservices.

ParserController() - Constructor for class au.org.ala.biocache.web.ParserController

PersistentQueueDAO - Interface in au.org.ala.biocache.dao

A DAO for a persistent FIFO QUEUE.

persistentQueueDAO - Variable in class au.org.ala.biocache.service.DownloadService

persistentQueueDAO - Variable in class au.org.ala.biocache.web.DownloadController

pointLegendImage(Integer, Integer, Integer, HttpServletResponse) - Method in class au.org.ala.biocache.web.MapController

pointsWmsImage(SpatialSearchRequestParams, Integer, Integer, Integer, Integer, Integer, String, String, String, boolean, String, HttpServletResponse) - Method in class au.org.ala.biocache.web.MapController

Deprecated.

PointType - Enum in au.org.ala.biocache.dto

Enum to store the groupings or lat/long accuracy level (for zoom levels) label correspond to SOLR fields in $SOLR_HOME/conf/schema.xml value corresponds to the "accuracy" in decimal degrees

printStats(String) - Method in class au.org.ala.biocache.web.DuplicationController

processRecord(HttpServletRequest, HttpServletResponse) - Method in class au.org.ala.biocache.web.ParserController

put(String, String, String, double[], String[]) - Static method in class au.org.ala.biocache.util.ParamsCache

Store search params and return key.

put(String, String, PointType, WMSTile) - Static method in class au.org.ala.biocache.util.WMSCache

Store search params and return key.

Q

q - Variable in class au.org.ala.biocache.dto.SearchRequestParams

qa - Variable in class au.org.ala.biocache.dto.DownloadRequestParams

the CSV list of issue types to include in the download, defaults to all.

qc - Variable in class au.org.ala.biocache.dto.SearchRequestParams

The query context to be used for the search.

qId - Variable in class au.org.ala.biocache.dto.SearchRequestParams

Only used to store the formattedQuery to be passed around in biocache-service

qidPattern - Variable in class au.org.ala.biocache.dao.SearchDAOImpl

qidPattern - Static variable in class au.org.ala.biocache.util.ParamsCache

query - Variable in class au.org.ala.biocache.dto.ValidationRuleDTO

queryInfo(SpatialSearchRequestParams) - Method in class au.org.ala.biocache.web.WMSController

List data providers for a query.

queryMethod - Variable in class au.org.ala.biocache.dao.SearchDAOImpl

QUOTE - Static variable in class au.org.ala.biocache.dao.SearchDAOImpl

R

radius - Variable in class au.org.ala.biocache.dto.SpatialSearchRequestParams

radiusAtLocation(double, double) - Static method in class au.org.ala.biocache.util.SpatialUtils

Returns the radius of the earth at the latitude of the supplied Location (see Wikipedia for source).

radiusPointsGeoJson(SpatialSearchRequestParams, Integer, String, String, Model) - Method in class au.org.ala.biocache.web.ExploreController

GeoJSON view of records as clusters of points within a specified radius of a given location This service will be used by explore your area.

radiusToZoomLevelMap - Static variable in class au.org.ala.biocache.web.ExploreController

Mapping of radius in km to OpenLayers zoom level

RANGE_SUFFIX - Static variable in class au.org.ala.biocache.dao.SearchDAOImpl

RangeBasedFacets - Class in au.org.ala.biocache.util

RangeBasedFacets() - Constructor for class au.org.ala.biocache.util.RangeBasedFacets

rangeFacets - Static variable in class au.org.ala.biocache.util.RangeBasedFacets

rank - Variable in class au.org.ala.biocache.dto.BreakdownRequestParams

rank - Variable in class au.org.ala.biocache.dto.TaxaCountDTO

rank - Variable in class au.org.ala.biocache.dto.TaxaRankCountDTO

reason - Variable in class au.org.ala.biocache.dto.DownloadRequestParams

reasonTypeId - Variable in class au.org.ala.biocache.dto.DownloadRequestParams

reduceNameByVowels(String, int) - Static method in class au.org.ala.biocache.util.AlaFileUtils

Reduces the supplied name to the required length, by first removing non-leading vowels and then substringing.

refreshAuth() - Method in class au.org.ala.biocache.web.AdminController

Returns true when in service is in readonly mode.

refreshCache() - Method in class au.org.ala.biocache.service.AlaLayersService

refreshCache() - Method in class au.org.ala.biocache.web.OccurrenceController

Occurrence search page uses SOLR JSON to display results

refreshCaches() - Method in interface au.org.ala.biocache.dao.SearchDAO

Refresh any caches in use to populate queries.

refreshCaches() - Method in class au.org.ala.biocache.dao.SearchDAOImpl

refreshFromPersistent() - Method in class au.org.ala.biocache.dao.JsonPersistentQueueDAOImpl

refreshFromPersistent() - Method in interface au.org.ala.biocache.dao.PersistentQueueDAO

Refreshes the list from the persistent data store

registerDownload(DownloadRequestParams, String, DownloadDetailsDTO.DownloadType) - Method in class au.org.ala.biocache.service.DownloadService

Registers a new active download

registryUrl - Variable in class au.org.ala.biocache.service.DownloadService

registryUrl - Variable in class au.org.ala.biocache.util.CollectionsCache

registryUrl - Variable in class au.org.ala.biocache.util.ContactUtils

registryUrl - Variable in class au.org.ala.biocache.web.AssertionController

registryUrl - Variable in class au.org.ala.biocache.web.UploadController

reindex(HttpServletRequest, HttpServletResponse) - Method in class au.org.ala.biocache.web.AdminController

Reindexes the supplied dr based on modifications since the supplied date.

reinitialiseRules(HttpServletRequest, HttpServletResponse) - Method in class au.org.ala.biocache.web.ValidationRuleController

reloadCache() - Method in class au.org.ala.biocache.service.LoggerRestService

Use a fixed delay so that the next time it is run depends on the last time it finished

reloadCaches() - Method in class au.org.ala.biocache.service.AuthService

remove(String, String, PointType) - Static method in class au.org.ala.biocache.util.WMSCache

remove a specific cache entry.

removeDownloadFromQueue(DownloadDetailsDTO) - Method in class au.org.ala.biocache.dao.JsonPersistentQueueDAOImpl

removeDownloadFromQueue(DownloadDetailsDTO) - Method in interface au.org.ala.biocache.dao.PersistentQueueDAO

Removes the supplied download from the queue

removeFromFilterQuery(String) - Method in class au.org.ala.biocache.dto.SearchQuery

restfulClient - Variable in class au.org.ala.biocache.web.OccurrenceController

restTemplate - Variable in class au.org.ala.biocache.service.AuthService

roundDownToPointType(double) - Method in enum au.org.ala.biocache.dto.PointType

roundToPointType(double) - Method in enum au.org.ala.biocache.dto.PointType

roundUpToPointType(double) - Method in enum au.org.ala.biocache.dto.PointType

S

scatterplot(SpatialSearchRequestParams, String, String, Integer, Integer, String, String, Double, HttpServletResponse) - Method in class au.org.ala.biocache.web.ScatterplotController

ScatterplotController - Class in au.org.ala.biocache.web

This controller is responsible for providing basic scatterplot services.

ScatterplotController() - Constructor for class au.org.ala.biocache.web.ScatterplotController

scatterplotPointInfo(SpatialSearchRequestParams, String, String, Integer, Integer, String, Integer, Integer, Integer, Integer) - Method in class au.org.ala.biocache.web.ScatterplotController

SearchDAO - Interface in au.org.ala.biocache.dao

DAO for searching occurrence records held in the biocache.

searchDAO - Variable in class au.org.ala.biocache.web.BreakdownController

searchDAO - Variable in class au.org.ala.biocache.web.DownloadController

Fulltext search DAO

searchDAO - Variable in class au.org.ala.biocache.web.DuplicationController

Fulltext search DAO

searchDao - Variable in class au.org.ala.biocache.web.ExploreController

Fulltext search DAO

searchDAO - Variable in class au.org.ala.biocache.web.GeospatialController

Fulltext search DAO

searchDAO - Variable in class au.org.ala.biocache.web.MapController

searchDAO - Variable in class au.org.ala.biocache.web.OccurrenceController

Fulltext search DAO

searchDAO - Variable in class au.org.ala.biocache.web.ScatterplotController

searchDAO - Variable in class au.org.ala.biocache.web.ValidationRuleController

searchDAO - Variable in class au.org.ala.biocache.web.WMSController

Fulltext search DAO

SearchDAOImpl - Class in au.org.ala.biocache.dao

SOLR implementation of SearchDao.

SearchDAOImpl() - Constructor for class au.org.ala.biocache.dao.SearchDAOImpl

Initialise the SOLR server instance

SearchQuery - Class in au.org.ala.biocache.dto

A model object to aid in the sharing and manipulation of query values

SearchQuery(String, String, String[]) - Constructor for class au.org.ala.biocache.dto.SearchQuery

SearchQuery(String, String) - Constructor for class au.org.ala.biocache.dto.SearchQuery

SearchRequestParams - Class in au.org.ala.biocache.dto

Data Transfer Object to represent the request parameters required to search for occurrence records against biocache-service.

SearchRequestParams() - Constructor for class au.org.ala.biocache.dto.SearchRequestParams

SearchResultDTO - Class in au.org.ala.biocache.dto

DTO to represents the results from a Lucene search NC: Changed the result type to OccurrenceIndex

SearchResultDTO(List<OccurrenceIndex>) - Constructor for class au.org.ala.biocache.dto.SearchResultDTO

Constructor with 2 args

SearchResultDTO() - Constructor for class au.org.ala.biocache.dto.SearchResultDTO

Constructor with no args

searchUtils - Variable in class au.org.ala.biocache.dao.SearchDAOImpl

SearchUtils - Class in au.org.ala.biocache.util

A class to provide utility methods used to populate search details.

SearchUtils() - Constructor for class au.org.ala.biocache.util.SearchUtils

searchUtils - Variable in class au.org.ala.biocache.web.BreakdownController

searchUtils - Variable in class au.org.ala.biocache.web.MapController

Search Utils helper class

searchUtils - Variable in class au.org.ala.biocache.web.OccurrenceController

Data Resource DAO

searchUtils - Variable in class au.org.ala.biocache.web.WMSController

SearchUtils.Month - Enum in au.org.ala.biocache.util

Enum for months lookup

sendEmail(String, String, String, String) - Method in class au.org.ala.biocache.service.EmailService

Sends an email with the supplied details.

sendEmail(String, String, String) - Method in class au.org.ala.biocache.service.EmailService

Sends an email from the default sender using the supplied details.

SensitiveOccurrenceIndex - Class in au.org.ala.biocache.dto

DTO for sensitive field values.

SensitiveOccurrenceIndex() - Constructor for class au.org.ala.biocache.dto.SensitiveOccurrenceIndex

sep - Variable in class au.org.ala.biocache.dto.DownloadRequestParams

The CSV separator to use

serialize(Object, JsonGenerator, SerializerProvider) - Method in class au.org.ala.biocache.util.CustomDateSerializer

server - Variable in class au.org.ala.biocache.dao.SearchDAOImpl

SOLR server instance

server - Variable in class au.org.ala.biocache.dao.TaxonDAOImpl

setActiveFacetMap(Map<String, Facet>) - Method in class au.org.ala.biocache.dto.SearchResultDTO

setAlaUserName(String) - Method in class au.org.ala.biocache.dto.OccurrenceDTO

setAlternativeFormats(Map<String, String>) - Method in class au.org.ala.biocache.dto.MediaDTO

setApi_key(String) - Method in class au.org.ala.biocache.web.UserUpload

setApiKey(String) - Method in class au.org.ala.biocache.dto.ValidationRuleDTO

setArea(String) - Method in class au.org.ala.biocache.dto.ValidationRuleDTO

setAssertions(String[]) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setAssertionUtils(AssertionUtils) - Method in class au.org.ala.biocache.web.AssertionController

setAssertionUtils(AssertionUtils) - Method in class au.org.ala.biocache.web.OccurrenceController

setAssertionUtils(AssertionUtils) - Method in class au.org.ala.biocache.web.ValidationRuleController

setAssociatedEntityUid(String) - Method in class au.org.ala.biocache.dto.ContactDTO

setAustConservation(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setAuthority(Integer) - Method in class au.org.ala.biocache.dto.ValidationUserDTO

setAuthService(AuthService) - Method in class au.org.ala.biocache.util.AssertionUtils

setAuthService(AuthService) - Method in class au.org.ala.biocache.web.AdminController

setAuthService(AuthService) - Method in class au.org.ala.biocache.web.ValidationRuleController

setBaseWsUrl(String) - Method in class au.org.ala.biocache.web.WMSController

setBasisOfRecord(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setBbox(double[]) - Method in class au.org.ala.biocache.util.ParamsCacheObject

setBbox(double[]) - Method in class au.org.ala.biocache.util.WMSTile

setBieUriPrefix(String) - Method in class au.org.ala.biocache.service.SpeciesLookupRestService

setCached(boolean) - Method in class au.org.ala.biocache.util.WMSTile

setChildGroups(List<SpeciesGroupDTO>) - Method in class au.org.ala.biocache.dto.SpeciesGroupDTO

setClassification(String) - Method in class au.org.ala.biocache.dto.ValidationRuleDTO

setClasss(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setCollectionName(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setCollectionUid(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setCollector(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setCollectors(String[]) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setColour(int) - Method in class au.org.ala.biocache.util.LegendItem

setColourmode(String) - Method in class au.org.ala.biocache.util.WMSTile

setColours(List<Integer>) - Method in class au.org.ala.biocache.util.WMSTile

setComment(String) - Method in class au.org.ala.biocache.dto.ValidationRuleDTO

setCommonName(String) - Method in class au.org.ala.biocache.dto.MiniTaxonConceptDTO

setCommonName(String) - Method in class au.org.ala.biocache.dto.TaxaCountDTO

setConsensus(FullRecord) - Method in class au.org.ala.biocache.dto.OccurrenceDTO

setContactUtils(ContactUtils) - Method in class au.org.ala.biocache.util.AssertionUtils

setContactUtils(ContactUtils) - Method in class au.org.ala.biocache.web.OccurrenceController

setContentType(String) - Method in class au.org.ala.biocache.dto.MediaDTO

setCoordinates(List<Float>) - Method in class au.org.ala.biocache.dto.OccurrencePoint

setCoordinateUncertaintyInMeters(Double) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setCount(long) - Method in class au.org.ala.biocache.dto.DataProviderCountDTO

setCount(Integer) - Method in class au.org.ala.biocache.dto.FacetResultDTO

setCount(long) - Method in class au.org.ala.biocache.dto.FieldResultDTO

setCount(Long) - Method in class au.org.ala.biocache.dto.MiniTaxonConceptDTO

setCount(Long) - Method in class au.org.ala.biocache.dto.OccurrencePoint

setCount(int) - Method in class au.org.ala.biocache.dto.OccurrenceSourceDTO

setCount(long) - Method in class au.org.ala.biocache.dto.SpeciesGroupDTO

setCount(Long) - Method in class au.org.ala.biocache.dto.TaxaCountDTO

setCountry(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setCounts(List<int[]>) - Method in class au.org.ala.biocache.util.WMSTile

setCreated(long) - Method in class au.org.ala.biocache.util.WMSTile

setDataHub(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setDataHubUid(String[]) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setDataProviderName(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setDataProviderUid(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setDataResourceName(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setDataResourceUid(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setDataType(String) - Method in class au.org.ala.biocache.dto.IndexFieldDTO

setDataType(String) - Method in class au.org.ala.biocache.dto.StatsIndexFieldDTO

setDecimalLatitude(Double) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setDecimalLongitude(Double) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setDefaultParams(SearchRequestParams) - Static method in class au.org.ala.biocache.util.SearchUtils

Provide default values for parameters if they have any null or "empty" values

setDescription(String) - Method in class au.org.ala.biocache.dto.IndexFieldDTO

setDir(String) - Method in class au.org.ala.biocache.dto.SearchRequestParams

Set the value of dir

setDir(String) - Method in class au.org.ala.biocache.dto.SearchResultDTO

setDisplayName(String) - Method in class au.org.ala.biocache.dto.ContactDTO

setDisplayName(String) - Method in class au.org.ala.biocache.dto.Facet

setDisplayString(String) - Method in class au.org.ala.biocache.dto.SearchQuery

setDisplayString(String) - Method in class au.org.ala.biocache.dto.SearchRequestParams

setDisplayString(String) - Method in class au.org.ala.biocache.util.ParamsCacheObject

setDownloadParams(String) - Method in class au.org.ala.biocache.dto.DownloadDetailsDTO

setDownloadType(DownloadDetailsDTO.DownloadType) - Method in class au.org.ala.biocache.dto.DownloadDetailsDTO

setEmail(String) - Method in class au.org.ala.biocache.dto.ContactDTO

setEmail(String) - Method in class au.org.ala.biocache.dto.DownloadDetailsDTO

setEmail(String) - Method in class au.org.ala.biocache.dto.DownloadRequestParams

setEmail(String) - Method in class au.org.ala.biocache.dto.ValidationUserDTO

setEmail(String) - Method in class au.org.ala.biocache.web.UserUpload

setEnabled(Boolean) - Method in class au.org.ala.biocache.service.SpeciesLookupRestService

setEnd(Number) - Method in class au.org.ala.biocache.dto.StatsIndexFieldDTO

setEntityQuery(String) - Method in class au.org.ala.biocache.dto.SearchQuery

setErrorMessage(String) - Method in class au.org.ala.biocache.dto.SearchResultDTO

setEsc(Character) - Method in class au.org.ala.biocache.dto.DownloadRequestParams

setEventDate(Date) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setExtra(String) - Method in class au.org.ala.biocache.dto.DownloadRequestParams

setFacet(Boolean) - Method in class au.org.ala.biocache.dto.SearchRequestParams

setFacetResults(List<FacetResultDTO>) - Method in class au.org.ala.biocache.dto.SearchResultDTO

setFacets(String[]) - Method in class au.org.ala.biocache.dto.SearchRequestParams

setFamily(String) - Method in class au.org.ala.biocache.dto.MiniTaxonConceptDTO

setFamily(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setFamily(String) - Method in class au.org.ala.biocache.dto.TaxaCountDTO

setField(String) - Method in class au.org.ala.biocache.dto.FacetThemes.Facet

setFieldName(String) - Method in class au.org.ala.biocache.dto.FacetResultDTO

setFieldResult(ArrayList<FieldResultDTO>) - Method in class au.org.ala.biocache.dto.FacetResultDTO

setFields(String) - Method in class au.org.ala.biocache.dto.DownloadRequestParams

setFieldValue(String) - Method in class au.org.ala.biocache.dto.FieldResultDTO

setFile(String) - Method in class au.org.ala.biocache.dto.DownloadRequestParams

setFileLocation(String) - Method in class au.org.ala.biocache.dto.DownloadDetailsDTO

setFilePath(String) - Method in class au.org.ala.biocache.dto.MediaDTO

setFileType(String) - Method in class au.org.ala.biocache.dto.DownloadRequestParams

setFirstName(String) - Method in class au.org.ala.biocache.web.UserUpload

setFl(String) - Method in class au.org.ala.biocache.dto.SearchRequestParams

setFlimit(Integer) - Method in class au.org.ala.biocache.dto.SearchRequestParams

setFoffset(Integer) - Method in class au.org.ala.biocache.dto.SearchRequestParams

setFormattedQuery(String) - Method in class au.org.ala.biocache.dto.SearchRequestParams

setFprefix(String) - Method in class au.org.ala.biocache.dto.SearchRequestParams

setFq(String) - Method in class au.org.ala.biocache.dto.FieldResultDTO

setFq(String[]) - Method in class au.org.ala.biocache.dto.SearchRequestParams

Set the value of fq

setFqs(String[]) - Method in class au.org.ala.biocache.util.ParamsCacheObject

setFsort(String) - Method in class au.org.ala.biocache.dto.SearchRequestParams

setGap(Number) - Method in class au.org.ala.biocache.dto.StatsIndexFieldDTO

setGenus(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setGenusGuid(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setGeospatialKosher(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setGk(Boolean) - Method in class au.org.ala.biocache.dto.SpatialSearchRequestParams

setGuid(String) - Method in class au.org.ala.biocache.dto.MiniTaxonConceptDTO

setGuid(String) - Method in class au.org.ala.biocache.dto.TaxaCountDTO

setHasCSOnly(boolean) - Method in class au.org.ala.biocache.dto.NativeDTO

setHasOccurrenceRecords(boolean) - Method in class au.org.ala.biocache.dto.NativeDTO

setHasUserAssertions(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setHeaderMap(Map<String, String>) - Method in class au.org.ala.biocache.dto.DownloadDetailsDTO

setHost(String) - Method in class au.org.ala.biocache.service.EmailService

setIbra(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setId(String) - Method in class au.org.ala.biocache.dto.DataProviderCountDTO

setId(Integer) - Method in class au.org.ala.biocache.dto.ValidationRuleDTO

setIgnored(Boolean) - Method in class au.org.ala.biocache.dto.ValidationRuleDTO

setImage(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setImageMetadata(List<Map<String, Object>>) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setImages(List<MediaDTO>) - Method in class au.org.ala.biocache.dto.OccurrenceDTO

setImages(String[]) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setImageThumbnailUrl(String) - Method in class au.org.ala.biocache.dto.MiniTaxonConceptDTO

setImageUrl(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setImageUrls(String[]) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setImcra(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setIncludeSensitive(boolean) - Method in class au.org.ala.biocache.dto.DownloadDetailsDTO

setIndexed(boolean) - Method in class au.org.ala.biocache.dto.IndexFieldDTO

setInstitutionName(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setInstitutionUid(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setIpAddress(String) - Method in class au.org.ala.biocache.dto.DownloadDetailsDTO

setIsAdmin(Boolean) - Method in class au.org.ala.biocache.dto.ValidationUserDTO

setIsNSL(boolean) - Method in class au.org.ala.biocache.dto.NativeDTO

setKingdom(String) - Method in class au.org.ala.biocache.dto.MiniTaxonConceptDTO

setKingdom(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setKingdom(String) - Method in class au.org.ala.biocache.dto.TaxaCountDTO

setLabel(String) - Method in class au.org.ala.biocache.dto.FieldResultDTO

setLabel(String) - Method in enum au.org.ala.biocache.dto.PointType

setLargeImageUrl(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setLargestCacheableSize(long) - Static method in class au.org.ala.biocache.util.ParamsCache

setLargestCacheableSize(long) - Static method in class au.org.ala.biocache.util.WMSCache

setLastModified(Date) - Method in class au.org.ala.biocache.dto.ValidationRuleDTO

setLastName(String) - Method in class au.org.ala.biocache.web.UserUpload

setLastUse(Long) - Method in class au.org.ala.biocache.util.ParamsCacheObject

setLastUse(long) - Method in class au.org.ala.biocache.util.WMSTile

setLat(Float) - Method in class au.org.ala.biocache.dto.SpatialSearchRequestParams

setLatLong(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setLayerId(String) - Method in class au.org.ala.biocache.dto.OutlierInfo

setLeft(Integer) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setLevel(String) - Method in class au.org.ala.biocache.dto.BreakdownRequestParams

setLevel(int) - Method in class au.org.ala.biocache.dto.SpeciesGroupDTO

setLga(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setLon(Float) - Method in class au.org.ala.biocache.dto.SpatialSearchRequestParams

setMax(Integer) - Method in class au.org.ala.biocache.dto.BreakdownRequestParams

setMax(Float) - Method in class au.org.ala.biocache.dto.OutlierInfo

setMaxCacheSize(long) - Static method in class au.org.ala.biocache.util.ParamsCache

setMaxCacheSize(long) - Static method in class au.org.ala.biocache.util.WMSCache

setMaxFileAge(long) - Static method in class au.org.ala.biocache.util.ParamsCache

setMaxMultiPartThreads(Integer) - Method in class au.org.ala.biocache.dao.SearchDAOImpl

setMean(Float) - Method in class au.org.ala.biocache.dto.OutlierInfo

setMessageSource(AbstractMessageSource) - Method in class au.org.ala.biocache.service.SpeciesLookupIndexService

setMessageSource(AbstractMessageSource) - Method in class au.org.ala.biocache.service.SpeciesLookupRestService

setMin(Float) - Method in class au.org.ala.biocache.dto.OutlierInfo

setMinCacheSize(long) - Static method in class au.org.ala.biocache.util.ParamsCache

setMinCacheSize(long) - Static method in class au.org.ala.biocache.util.WMSCache

setMonth(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setMultimedia(String[]) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setName(String) - Method in class au.org.ala.biocache.dto.BreakdownRequestParams

setName(String) - Method in class au.org.ala.biocache.dto.DataProviderCountDTO

setName(String) - Method in class au.org.ala.biocache.dto.Facet

setName(String) - Method in class au.org.ala.biocache.dto.IndexFieldDTO

setName(String) - Method in class au.org.ala.biocache.dto.OccurrenceSourceDTO

setName(String) - Method in class au.org.ala.biocache.dto.SpeciesGroupDTO

setName(String) - Method in class au.org.ala.biocache.dto.TaxaCountDTO

setName(String) - Method in class au.org.ala.biocache.web.UserUpload

setNameIndexLocation(String) - Method in class au.org.ala.biocache.service.SpeciesLookupIndexService

setNamesLsid(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setNumberDistinctValues(Integer) - Method in class au.org.ala.biocache.dto.IndexFieldDTO

setNumberOfRecords(Integer) - Method in class au.org.ala.biocache.web.UserUpload

setOccurrenceDetails(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setOccurrenceID(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setOccurrences(List<OccurrenceIndex>) - Method in class au.org.ala.biocache.dto.SearchResultDTO

setOccurrenceUid(String) - Method in class au.org.ala.biocache.dto.OccurrencePoint

setOccurrenceYear(Date) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setOrder(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setOrganizationName(String) - Method in class au.org.ala.biocache.web.WMSController

setOrgCity(String) - Method in class au.org.ala.biocache.web.WMSController

setOrgCountry(String) - Method in class au.org.ala.biocache.web.WMSController

setOrgEmail(String) - Method in class au.org.ala.biocache.web.WMSController

setOrgFax(String) - Method in class au.org.ala.biocache.web.WMSController

setOrgPhone(String) - Method in class au.org.ala.biocache.web.WMSController

setOrgPostcode(String) - Method in class au.org.ala.biocache.web.WMSController

setOrgStateProvince(String) - Method in class au.org.ala.biocache.web.WMSController

setOutlierValues(Float[]) - Method in class au.org.ala.biocache.dto.OutlierInfo

setPageSize(Integer) - Method in class au.org.ala.biocache.dto.SearchRequestParams

Set the value of pageSize

setPageSize(long) - Method in class au.org.ala.biocache.dto.SearchResultDTO

setPhone(String) - Method in class au.org.ala.biocache.dto.ContactDTO

setPhotographer(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setPhylum(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setPoint00001(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setPoint0001(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setPoint001(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setPoint01(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setPoint1(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setPoints(List<float[]>) - Method in class au.org.ala.biocache.util.WMSTile

setPort(String) - Method in class au.org.ala.biocache.service.EmailService

setProcessed(FullRecord) - Method in class au.org.ala.biocache.dto.OccurrenceDTO

setQ(String) - Method in class au.org.ala.biocache.dto.SearchRequestParams

Set the value of q

setQ(String) - Method in class au.org.ala.biocache.util.ParamsCacheObject

setQa(String) - Method in class au.org.ala.biocache.dto.DownloadRequestParams

setQc(String) - Method in class au.org.ala.biocache.dto.SearchRequestParams

setQId(Long) - Method in class au.org.ala.biocache.dto.SearchRequestParams

setQr(QueryResponse) - Method in class au.org.ala.biocache.dto.SearchResultDTO

setQuery(String) - Method in class au.org.ala.biocache.dto.SearchQuery

setQuery(String) - Method in class au.org.ala.biocache.dto.SearchResultDTO

setQuery(String) - Method in class au.org.ala.biocache.dto.ValidationRuleDTO

setQuery(String) - Method in class au.org.ala.biocache.util.WMSTile

setQueryTitle(String) - Method in class au.org.ala.biocache.dto.SearchResultDTO

setRadius(Float) - Method in class au.org.ala.biocache.dto.SpatialSearchRequestParams

setRange(Float) - Method in class au.org.ala.biocache.dto.OutlierInfo

setRank(String) - Method in class au.org.ala.biocache.dto.BreakdownRequestParams

setRank(String) - Method in class au.org.ala.biocache.dto.MiniTaxonConceptDTO

setRank(String) - Method in class au.org.ala.biocache.dto.TaxaCountDTO

setRank(String) - Method in class au.org.ala.biocache.dto.TaxaRankCountDTO

setRankId(String) - Method in class au.org.ala.biocache.dto.MiniTaxonConceptDTO

setRaw(FullRecord) - Method in class au.org.ala.biocache.dto.OccurrenceDTO

setRaw_basisOfRecord(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setRaw_catalogNumber(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setRaw_collectionCode(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setRaw_countryCode(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setRaw_institutionCode(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setRaw_locationRemarks(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setRaw_occurrenceRemarks(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setRaw_scientificName(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setRaw_typeStatus(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setRaw_vernacularName(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setReason(String) - Method in class au.org.ala.biocache.dto.DownloadRequestParams

setReasonTypeId(Integer) - Method in class au.org.ala.biocache.dto.DownloadRequestParams

setRecordID(String) - Method in class au.org.ala.biocache.dto.OutlierInfo

setRecordLayerValue(Float) - Method in class au.org.ala.biocache.dto.OutlierInfo

setRecordNumber(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setRegistryUrl(String) - Method in class au.org.ala.biocache.web.UploadController

setRequestParams(DownloadRequestParams) - Method in class au.org.ala.biocache.dto.DownloadDetailsDTO

setRestTemplate(RestOperations) - Method in class au.org.ala.biocache.service.SpeciesLookupRestService

setRestTemplate(RestOperations) - Method in class au.org.ala.biocache.util.ContactUtils

setRGB(int) - Method in class au.org.ala.biocache.util.LegendItem

setRight(Integer) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setRights(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setRole(String) - Method in class au.org.ala.biocache.dto.ContactDTO

setRowKey(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setSampleSize(Integer) - Method in class au.org.ala.biocache.dto.OutlierInfo

setScientificName(String) - Method in class au.org.ala.biocache.dto.MiniTaxonConceptDTO

setScientificName(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setSearchDAO(SearchDAO) - Method in class au.org.ala.biocache.web.BreakdownController

setSearchDao(SearchDAO) - Method in class au.org.ala.biocache.web.ExploreController

setSearchDAO(SearchDAO) - Method in class au.org.ala.biocache.web.MapController

setSearchDAO(SearchDAO) - Method in class au.org.ala.biocache.web.OccurrenceController

setSearchDAO(SearchDAO) - Method in class au.org.ala.biocache.web.ValidationRuleController

setSearchDAO(SearchDAO) - Method in class au.org.ala.biocache.web.WMSController

setSearchUtils(SearchUtils) - Method in class au.org.ala.biocache.web.MapController

setSearchUtils(SearchUtils) - Method in class au.org.ala.biocache.web.OccurrenceController

setSearchUtils(SearchUtils) - Method in class au.org.ala.biocache.web.WMSController

setSender(String) - Method in class au.org.ala.biocache.service.EmailService

setSensitive(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setSensitiveCoordinateUncertaintyInMeters(Double) - Method in class au.org.ala.biocache.dto.SensitiveOccurrenceIndex

setSensitiveDecimalLatitude(Double) - Method in class au.org.ala.biocache.dto.SensitiveOccurrenceIndex

setSensitiveDecimalLongitude(Double) - Method in class au.org.ala.biocache.dto.SensitiveOccurrenceIndex

setSep(Character) - Method in class au.org.ala.biocache.dto.DownloadRequestParams

setServletConfig(ServletConfig) - Method in class au.org.ala.biocache.web.MapController

setSize(Long) - Method in class au.org.ala.biocache.util.ParamsCacheObject

setSize(long) - Method in class au.org.ala.biocache.util.WMSTile

setSmallImageUrl(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setSort(String) - Method in class au.org.ala.biocache.dto.SearchRequestParams

Set the value of sort

setSort(String) - Method in class au.org.ala.biocache.dto.SearchResultDTO

setSounds(List<MediaDTO>) - Method in class au.org.ala.biocache.dto.OccurrenceDTO

setSourceTypeId(Integer) - Method in class au.org.ala.biocache.dto.DownloadRequestParams

setSpecies(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setSpecies(String) - Method in class au.org.ala.biocache.dto.ValidationRuleDTO

setSpeciesCount(long) - Method in class au.org.ala.biocache.dto.SpeciesGroupDTO

setSpeciesGroups(String[]) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setSpeciesGuid(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setSpeciesLookupService(SpeciesLookupService) - Method in class au.org.ala.biocache.web.OccurrenceController

setSpeciesLookupService(SpeciesLookupService) - Method in class au.org.ala.biocache.web.ValidationRuleController

setStart(Integer) - Method in class au.org.ala.biocache.dto.SearchRequestParams

Set the value of start

setStart(Number) - Method in class au.org.ala.biocache.dto.StatsIndexFieldDTO

setStartDate(Date) - Method in class au.org.ala.biocache.dto.DownloadDetailsDTO

setStartIndex(Integer) - Method in class au.org.ala.biocache.dto.SearchRequestParams

Set the value of start

setStartIndex(long) - Method in class au.org.ala.biocache.dto.SearchResultDTO

setStateConservation(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setStateProvince(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setStats(FieldStatsInfo) - Method in class au.org.ala.biocache.dto.StatsIndexFieldDTO

setStatus(String) - Method in class au.org.ala.biocache.dto.SearchResultDTO

setStatus(String) - Method in class au.org.ala.biocache.dto.ValidationRuleDTO

setStdDev(Float) - Method in class au.org.ala.biocache.dto.OutlierInfo

setStored(boolean) - Method in class au.org.ala.biocache.dto.IndexFieldDTO

setSubspecies(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setSubspeciesGuid(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setSystemAssertions(Map<String, List<QualityAssertion>>) - Method in class au.org.ala.biocache.dto.OccurrenceDTO

setTaxa(List<FieldResultDTO>) - Method in class au.org.ala.biocache.dto.TaxaRankCountDTO

setTaxonConceptGuid(String) - Method in class au.org.ala.biocache.dto.OccurrencePoint

setTaxonConceptID(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setTaxonDAO(TaxonDAO) - Method in class au.org.ala.biocache.web.WMSController

setTaxonGuid(String) - Method in class au.org.ala.biocache.dto.NativeDTO

setTaxonomicKosher(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setTaxonRank(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setTaxonRankID(Integer) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setTempFilePath(String) - Static method in class au.org.ala.biocache.util.ParamsCache

setThreshold(Float) - Method in class au.org.ala.biocache.dto.OutlierInfo

setThrottle(Integer) - Method in class au.org.ala.biocache.dao.SearchDAOImpl

setThumbnailUrl(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setTotalRecords(long) - Method in class au.org.ala.biocache.dto.DownloadDetailsDTO

setTotalRecords(long) - Method in class au.org.ala.biocache.dto.SearchResultDTO

setType(PointType) - Method in class au.org.ala.biocache.dto.OccurrencePoint

setType(String) - Method in class au.org.ala.biocache.dto.SearchQuery

setTypeStatus(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setUid(String) - Method in class au.org.ala.biocache.dto.OccurrenceSourceDTO

setUploadStatusDir(String) - Method in class au.org.ala.biocache.web.UploadController

setUploadTempDir(String) - Method in class au.org.ala.biocache.web.UploadController

setUrlParameters(String) - Method in class au.org.ala.biocache.dto.SearchResultDTO

setUser(ValidationUserDTO) - Method in class au.org.ala.biocache.dto.ValidationRuleDTO

setUser(String) - Method in class au.org.ala.biocache.web.UserUpload

setUserAssertions(List<QualityAssertion>) - Method in class au.org.ala.biocache.dto.OccurrenceDTO

setUserId(String) - Method in class au.org.ala.biocache.dto.ContactDTO

setUuid(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setValue(String) - Method in class au.org.ala.biocache.dto.Facet

setValue(Float) - Method in enum au.org.ala.biocache.dto.PointType

setVernacularName(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

setVideo(List<MediaDTO>) - Method in class au.org.ala.biocache.dto.OccurrenceDTO

setWkt(String) - Method in class au.org.ala.biocache.dto.SpatialSearchRequestParams

setWkt(String) - Method in class au.org.ala.biocache.util.ParamsCacheObject

setYear(String) - Method in class au.org.ala.biocache.dto.OccurrenceIndex

ShapeFileRecordWriter - Class in au.org.ala.biocache.writer

A record writer that produces a shapefile.

ShapeFileRecordWriter(String, OutputStream, String[]) - Constructor for class au.org.ala.biocache.writer.ShapeFileRecordWriter

shouldPerformOperation(String, HttpServletResponse) - Method in class au.org.ala.biocache.web.AbstractSecureController

shouldPerformOperation(String, HttpServletResponse, boolean) - Method in class au.org.ala.biocache.web.AbstractSecureController

Returns true when the operation should be performed.

showCodes() - Method in class au.org.ala.biocache.web.AssertionController

Retrieve an array of the assertion codes in use by the processing system

showGeospatialCodes() - Method in class au.org.ala.biocache.web.AssertionController

showMiscellaneousCodes() - Method in class au.org.ala.biocache.web.AssertionController

showOccurrence(String) - Method in class au.org.ala.biocache.web.OccurrenceController

Occurrence record page When user supplies a uuid that is not found search for a unique record with the supplied occurrenc_id Returns a SearchResultDTO when there is more than 1 record with the supplied UUID TODO move to service layer

showOccurrence(String, String, String, HttpServletRequest, HttpServletResponse) - Method in class au.org.ala.biocache.web.OccurrenceController

Occurrence record page When user supplies a uuid that is not found search for a unique record with the supplied occurrence_id Returns a SearchResultDTO when there is more than 1 record with the supplied UUID

showSensitiveOccurrence(String, String, String, HttpServletRequest, HttpServletResponse) - Method in class au.org.ala.biocache.web.OccurrenceController

showTaxonomicCodes() - Method in class au.org.ala.biocache.web.AssertionController

showTemporalCodes() - Method in class au.org.ala.biocache.web.AssertionController

showUserCodes() - Method in class au.org.ala.biocache.web.AssertionController

sizeOf(int, boolean) - Static method in class au.org.ala.biocache.util.WMSTile

get approximate size in bytes for a WMSTile.

sort - Variable in class au.org.ala.biocache.dto.SearchRequestParams

sourceByTaxon(SpatialSearchRequestParams, String) - Method in class au.org.ala.biocache.web.OccurrenceController

Obtains a list of the sources for the supplied guid.

sourceTypeId - Variable in class au.org.ala.biocache.dto.DownloadRequestParams

spacesPattern - Variable in class au.org.ala.biocache.dao.SearchDAOImpl

spatialPattern - Variable in class au.org.ala.biocache.dao.SearchDAOImpl

SpatialSearchRequestParams - Class in au.org.ala.biocache.dto

Data Transfer Object to represent the request parameters required to perform a spatial search on occurrence records against biocache-service.

SpatialSearchRequestParams() - Constructor for class au.org.ala.biocache.dto.SpatialSearchRequestParams

spatialUrl - Variable in class au.org.ala.biocache.service.AlaLayersService

SpatialUtils - Class in au.org.ala.biocache.util

Supplies spatial utilities that can be used for the geospatial seaches

SpatialUtils() - Constructor for class au.org.ala.biocache.util.SpatialUtils

species - Variable in class au.org.ala.biocache.dto.ValidationRuleDTO

speciesDensityLegend(SpatialSearchRequestParams, boolean, HttpServletRequest, HttpServletResponse) - Method in class au.org.ala.biocache.web.MapController

This method creates and renders a density map legend for a species.

speciesDensityMap(SpatialSearchRequestParams, boolean, boolean, String, String, String, Integer, Float, HttpServletRequest, HttpServletResponse) - Method in class au.org.ala.biocache.web.MapController

This method creates and renders a density map for a species.

SpeciesGroupDTO - Class in au.org.ala.biocache.dto

DTO for species group information including counts and indent levels

SpeciesGroupDTO() - Constructor for class au.org.ala.biocache.dto.SpeciesGroupDTO

SpeciesGroupDTO(String) - Constructor for class au.org.ala.biocache.dto.SpeciesGroupDTO

SpeciesGroupDTO(String, long, long, int) - Constructor for class au.org.ala.biocache.dto.SpeciesGroupDTO

SpeciesGroupDTO(String, List<SpeciesGroupDTO>) - Constructor for class au.org.ala.biocache.dto.SpeciesGroupDTO

SpeciesLookupIndexService - Class in au.org.ala.biocache.service

Index based lookup index serice

SpeciesLookupIndexService() - Constructor for class au.org.ala.biocache.service.SpeciesLookupIndexService

SpeciesLookupRestService - Class in au.org.ala.biocache.service

Implementation of SpeciesLookupService.java that calls the bie-service application via JSON REST web services.

SpeciesLookupRestService() - Constructor for class au.org.ala.biocache.service.SpeciesLookupRestService

SpeciesLookupService - Interface in au.org.ala.biocache.service

Service layer interface for accessing species lookups.

speciesLookupService - Variable in class au.org.ala.biocache.web.OccurrenceController

speciesLookupService - Variable in class au.org.ala.biocache.web.ValidationRuleController

speciesLookupServiceBean() - Method in class au.org.ala.biocache.config.AppConfig

start - Variable in class au.org.ala.biocache.dto.SearchRequestParams

startupInitialise - Variable in class au.org.ala.biocache.service.AuthService

StatsIndexFieldDTO - Class in au.org.ala.biocache.dto

A DTO for the statistics of a numeric field.

StatsIndexFieldDTO() - Constructor for class au.org.ala.biocache.dto.StatsIndexFieldDTO

StatsIndexFieldDTO(FieldStatsInfo, String) - Constructor for class au.org.ala.biocache.dto.StatsIndexFieldDTO

status - Variable in class au.org.ala.biocache.dto.ValidationRuleDTO

storeParams(SpatialSearchRequestParams, String, String, HttpServletResponse) - Method in class au.org.ala.biocache.web.WMSController

Store query params list

storeParams(Long) - Method in class au.org.ala.biocache.web.WMSController

Test presence of query params {id} in params store.

stripEscapedQuotes(String) - Static method in class au.org.ala.biocache.util.SearchUtils

substituteEmailAddress(String) - Method in class au.org.ala.biocache.service.AuthService

T

taxa - Variable in class au.org.ala.biocache.dto.TaxaRankCountDTO

TaxaCountDTO - Class in au.org.ala.biocache.dto

DTO bean to store taxa name, guid and count from a search

TaxaCountDTO() - Constructor for class au.org.ala.biocache.dto.TaxaCountDTO

TaxaCountDTO(String) - Constructor for class au.org.ala.biocache.dto.TaxaCountDTO

TaxaCountDTO(String, Long) - Constructor for class au.org.ala.biocache.dto.TaxaCountDTO

TaxaRankCountDTO - Class in au.org.ala.biocache.dto

A DTO that stores the rank and list of corresponding taxa/counts

TaxaRankCountDTO(String) - Constructor for class au.org.ala.biocache.dto.TaxaRankCountDTO

taxonConceptGuid - Variable in class au.org.ala.biocache.dto.OccurrencePoint

TaxonDAO - Interface in au.org.ala.biocache.dao

DAO for searching the biocache at a taxonomic level.

taxonDAO - Variable in class au.org.ala.biocache.web.WMSController

TaxonDAOImpl - Class in au.org.ala.biocache.dao

TaxonDAOImpl() - Constructor for class au.org.ala.biocache.dao.TaxonDAOImpl

Initialise the SOLR server instance

taxonIDPattern - Variable in class au.org.ala.biocache.web.OccurrenceController

Compiled pattern for taxon IDs

taxonIDPatternString - Variable in class au.org.ala.biocache.web.OccurrenceController

The response to be returned for the isAustralian test

taxonProfileEnabled - Variable in class au.org.ala.biocache.util.SearchUtils

tempDataResources - Variable in class au.org.ala.biocache.util.CollectionsCache

termPattern - Variable in class au.org.ala.biocache.dao.SearchDAOImpl

termQueryLimit - Variable in class au.org.ala.biocache.dao.SearchDAOImpl

toMap() - Method in class au.org.ala.biocache.dto.OccurrenceIndex

toString() - Method in class au.org.ala.biocache.dto.BreakdownRequestParams

toString() - Method in class au.org.ala.biocache.dto.DataProviderCountDTO

toString() - Method in class au.org.ala.biocache.dto.DownloadDetailsDTO

toString() - Method in class au.org.ala.biocache.dto.DownloadRequestParams

Custom toString method to produce a String to be used as the request parameters for the Biocache Service webservices

toString() - Method in class au.org.ala.biocache.dto.Facet

toString() - Method in class au.org.ala.biocache.dto.FieldResultDTO

toString() - Method in class au.org.ala.biocache.dto.IndexFieldDTO

toString() - Method in class au.org.ala.biocache.dto.MiniTaxonConceptDTO

toString() - Method in class au.org.ala.biocache.dto.OccurrencePoint

toString() - Method in class au.org.ala.biocache.dto.SearchRequestParams

Custom toString method to produce a String to be used as the request parameters for the Biocache Service webservices

toString(Boolean) - Method in class au.org.ala.biocache.dto.SearchRequestParams

Common code to output a param string with conditional encoding of values

toString() - Method in class au.org.ala.biocache.dto.SpatialSearchRequestParams

Custom toString method to produce a String to be used as the request parameters for the Biocache Service webservices

toString() - Method in class au.org.ala.biocache.dto.SpeciesGroupDTO

toString() - Method in class au.org.ala.biocache.dto.StatsIndexFieldDTO

toString() - Method in class au.org.ala.biocache.dto.TaxaCountDTO

toString() - Method in enum au.org.ala.biocache.util.MimeType

type - Variable in class au.org.ala.biocache.dto.OccurrencePoint

U

uidPattern - Variable in class au.org.ala.biocache.dao.SearchDAOImpl

unregisterDownload(DownloadDetailsDTO) - Method in class au.org.ala.biocache.service.DownloadService

Removes a completed download from active list.

updateCache() - Method in class au.org.ala.biocache.util.CollectionsCache

Update the entity types (fields)

updateCollectionSearchString(SearchRequestParams, String) - Method in class au.org.ala.biocache.util.SearchUtils

Returns an array that contains the search string to use for a collection search and display name for the results.

updateCounts(int) - Method in class au.org.ala.biocache.dto.DownloadDetailsDTO

updateQueryContext(SearchRequestParams) - Method in class au.org.ala.biocache.dao.SearchDAOImpl

Updates the supplied search params to cater for the query context

updateSize() - Method in class au.org.ala.biocache.util.ParamsCacheObject

updateSize() - Method in class au.org.ala.biocache.util.WMSTile

UploadController - Class in au.org.ala.biocache.web

Controller that supports the upload of CSV data to be indexed and processed in the biocache.

UploadController() - Constructor for class au.org.ala.biocache.web.UploadController

uploadOccurrenceData(HttpServletRequest, HttpServletResponse) - Method in class au.org.ala.biocache.web.UploadController

Upload a dataset using a POST, returning a UID for this data

uploadStatus(String, HttpServletResponse) - Method in class au.org.ala.biocache.web.UploadController

Upload a dataset using a POST, returning a UID for this data

uploadStatusDir - Variable in class au.org.ala.biocache.web.UploadController

uploadTempDir - Variable in class au.org.ala.biocache.web.UploadController

uploadThreads - Variable in class au.org.ala.biocache.web.UploadController

urnPattern - Variable in class au.org.ala.biocache.dao.SearchDAOImpl

user - Variable in class au.org.ala.biocache.dto.ValidationRuleDTO

userDetailsUrl - Variable in class au.org.ala.biocache.service.AuthService

userEmailToId - Variable in class au.org.ala.biocache.service.AuthService

userNamesById - Variable in class au.org.ala.biocache.service.AuthService

userNamesByNumericIds - Variable in class au.org.ala.biocache.service.AuthService

userNamesForIdPath - Variable in class au.org.ala.biocache.service.AuthService

userNamesForNumericIdPath - Variable in class au.org.ala.biocache.service.AuthService

userNamesFullPath - Variable in class au.org.ala.biocache.service.AuthService

UserUpload - Class in au.org.ala.biocache.web

UserUpload() - Constructor for class au.org.ala.biocache.web.UserUpload

usingLocalMediaRepo - Variable in class au.org.ala.biocache.dao.SearchDAOImpl

Max number of threads to use in endemic queries

V

ValidationRuleController - Class in au.org.ala.biocache.web

A controller for the submission and lookup of validation rules against occurrence records.

ValidationRuleController() - Constructor for class au.org.ala.biocache.web.ValidationRuleController

ValidationRuleDTO - Class in au.org.ala.biocache.dto

ValidationRuleDTO() - Constructor for class au.org.ala.biocache.dto.ValidationRuleDTO

ValidationUserDTO - Class in au.org.ala.biocache.dto

ValidationUserDTO() - Constructor for class au.org.ala.biocache.dto.ValidationUserDTO

value - Variable in class au.org.ala.biocache.dto.Facet

valueOf(String) - Static method in enum au.org.ala.biocache.dto.DownloadDetailsDTO.DownloadType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum au.org.ala.biocache.dto.OccurrenceSource

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum au.org.ala.biocache.dto.PointType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum au.org.ala.biocache.service.LoggerRestService.LoggerType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum au.org.ala.biocache.util.CollectionsCache.ResourceType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum au.org.ala.biocache.util.MimeType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum au.org.ala.biocache.util.SearchUtils.Month

Returns the enum constant of this type with the specified name.

values() - Static method in enum au.org.ala.biocache.dto.DownloadDetailsDTO.DownloadType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum au.org.ala.biocache.dto.OccurrenceSource

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum au.org.ala.biocache.dto.PointType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum au.org.ala.biocache.service.LoggerRestService.LoggerType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum au.org.ala.biocache.util.CollectionsCache.ResourceType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum au.org.ala.biocache.util.MimeType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum au.org.ala.biocache.util.SearchUtils.Month

Returns an array containing the constants of this enum type, in the order they are declared.

W

webservicesRoot - Variable in class au.org.ala.biocache.service.DownloadService

wkt - Variable in class au.org.ala.biocache.dto.SpatialSearchRequestParams

WMSCache - Class in au.org.ala.biocache.util

A cache of points and colours for WMS.

WMSCache() - Constructor for class au.org.ala.biocache.util.WMSCache

WMSController - Class in au.org.ala.biocache.web

This controller provides mapping services which include WMS services.

WMSController() - Constructor for class au.org.ala.biocache.web.WMSController

WMSTile - Class in au.org.ala.biocache.util

Represents a WMS tile.

write(String[]) - Method in class au.org.ala.biocache.writer.CSVRecordWriter

Writes the supplied record to output stream

write(String[]) - Method in class au.org.ala.biocache.writer.ShapeFileRecordWriter

Writes a new record to the download.

writeCoordinatesToStream(SearchRequestParams, OutputStream) - Method in interface au.org.ala.biocache.dao.SearchDAO

Write coordinates out to the supplied stream.

writeCoordinatesToStream(SearchRequestParams, OutputStream) - Method in class au.org.ala.biocache.dao.SearchDAOImpl

Writes all the distinct latitude and longitude in the index to the supplied output stream.

writeFacetToStream(SpatialSearchRequestParams, boolean, boolean, boolean, OutputStream, DownloadDetailsDTO) - Method in interface au.org.ala.biocache.dao.SearchDAO

Write facet content to supplied output stream

writeFacetToStream(SpatialSearchRequestParams, boolean, boolean, boolean, OutputStream, DownloadDetailsDTO) - Method in class au.org.ala.biocache.dao.SearchDAOImpl

Writes the values for the first supplied facet to output stream

writei18nPropertiesFile(String, HttpServletRequest, HttpServletResponse) - Method in class au.org.ala.biocache.web.OccurrenceController

Returns the content of the messages.properties file.

writeQueryToStream(DownloadRequestParams, HttpServletResponse, String, ServletOutputStream, boolean, boolean) - Method in class au.org.ala.biocache.service.DownloadService

writeResultsFromIndexToStream(DownloadRequestParams, OutputStream, boolean, DownloadDetailsDTO, boolean) - Method in interface au.org.ala.biocache.dao.SearchDAO

Writes the results of this query to the output stream using the index as a source of the data.

writeResultsFromIndexToStream(DownloadRequestParams, OutputStream, boolean, DownloadDetailsDTO, boolean) - Method in class au.org.ala.biocache.dao.SearchDAOImpl

Writes the index fields to the supplied output stream in CSV format.

writeResultsToStream(DownloadRequestParams, OutputStream, int, boolean, DownloadDetailsDTO) - Method in interface au.org.ala.biocache.dao.SearchDAO

Write out the results of this query to the output stream

writeResultsToStream(DownloadRequestParams, OutputStream, int, boolean, DownloadDetailsDTO) - Method in class au.org.ala.biocache.dao.SearchDAOImpl

Note - this method extracts from CASSANDRA rather than the Index.

writeSpeciesCountByCircleToStream(SpatialSearchRequestParams, String, ServletOutputStream) - Method in interface au.org.ala.biocache.dao.SearchDAO

Writes the species count in the specified circle to the output stream.

writeSpeciesCountByCircleToStream(SpatialSearchRequestParams, String, ServletOutputStream) - Method in class au.org.ala.biocache.dao.SearchDAOImpl

Y

yourAreaDownload(DownloadRequestParams, String, boolean, HttpServletResponse) - Method in class au.org.ala.biocache.web.ExploreController

Occurrence search page uses SOLR JSON to display results

yourAreaView(SpatialSearchRequestParams) - Method in class au.org.ala.biocache.web.ExploreController

Returns a list of species groups and counts that will need to be displayed.

yourHierarchicalAreaView(SpatialSearchRequestParams, String) - Method in class au.org.ala.biocache.web.ExploreController

Returns a hierarchical listing of species groups.

A B C D E F G H I J K L M N O P Q R S T U V W Y