au.org.ala.biocache.web

Class OccurrenceController

java.lang.Object

au.org.ala.biocache.web.AbstractSecureController

au.org.ala.biocache.web.OccurrenceController

@Controller
public class OccurrenceController
extends AbstractSecureController

Occurrences controller for the biocache web services.

Author:

"Nick dos Remedios ", "Natasha Carter " History: 1 Sept 10 (MOK011): added restfulClient to retrieve citation information into citation.txt [private void getCitations(Set keys, OutputStream out) throws HttpException, IOException] 14 Dept 10 (MOK011): modified getCitations function to get csv format data from Citation Service.

Field Summary

Fields

Modifier and Type	Field and Description
protected AssertionUtils	assertionUtils
protected AuthService	authService
protected String	biocacheMediaUrl
protected ContactUtils	contactUtils
protected DownloadService	downloadService
protected String	facetConfig
protected String	hostUrl
protected String	nativeCountry
protected org.ala.client.util.RestfulClient	restfulClient
protected SearchDAO	searchDAO Fulltext search DAO
protected SearchUtils	searchUtils Data Resource DAO
protected SpeciesLookupService	speciesLookupService
protected Pattern	taxonIDPattern Compiled pattern for taxon IDs
protected String	taxonIDPatternString The response to be returned for the isAustralian test

Fields inherited from class au.org.ala.biocache.web.AbstractSecureController

apiCheckUrl

Constructor Summary

Constructors

Constructor and Description
OccurrenceController()

Method Summary

Methods

Modifier and Type	Method and Description
String	batchDownload(javax.servlet.http.HttpServletResponse response, javax.servlet.http.HttpServletRequest request, DownloadRequestParams params, org.springframework.validation.BindingResult result, String filepath, String directory, String ip, org.springframework.ui.Model model)
void	batchDownload(javax.servlet.http.HttpServletResponse response, javax.servlet.http.HttpServletRequest request, String queries, String field, String separator, String title) Webservice to support bulk downloads for a long list of queries for a single field.
void	batchSearch(javax.servlet.http.HttpServletResponse response, String redirectBase, String queries, String field, String separator, String title) Given a list of queries for a single field, return an AJAX response with the qid (cached query id) NOTE: triggered on "Search" button
Object	compareOccurrenceVersions(String uuid) Returns a comparison of the occurrence versions.
void	downloadFacet(DownloadRequestParams requestParams, boolean includeCount, boolean lookupName, boolean includeSynonyms, String ip, javax.servlet.http.HttpServletRequest request, javax.servlet.http.HttpServletResponse response) Downloads the complete list of values in the supplied facet ONLY 1 facet should be included in the params.
void	dumpDistinctLatLongs(SearchRequestParams requestParams, javax.servlet.http.HttpServletResponse response) Dumps the distinct latitudes and longitudes that are used in the connected index (to 4 decimal places)
List<DownloadDetailsDTO>	getCurrentDownloads()
String[]	getDeleteOccurrences(String fromDate, javax.servlet.http.HttpServletResponse response) Returns the records uuids that have been deleted since the fromDate inclusive.
List<String>	getImages(String guid) Returns a list of image urls for the supplied taxon guid.
Set<IndexFieldDTO>	getIndexedFields(String fields) Returns a list with the details of the index field
List<FacetResultDTO>	getOccurrenceFacetDetails(SpatialSearchRequestParams requestParams) Returns a facet list including the number of distinct values for a field
Pattern	getTaxonIDPattern()
List	groupFacets() Returns the default facets grouped by themes that are applied to a search
String	homePageHandler(org.springframework.ui.Model model) Custom handler for the welcome view.
protected void	initBinder(org.springframework.web.bind.WebDataBinder binder) Need to initialise the validator to be used otherwise the @Valid annotation will not work
NativeDTO	isAustralian(String guid) Checks to see if the supplied GUID represents an Australian species.
String[]	listAllFacets() Returns the default facets that are applied to a search
SearchResultDTO	listOccurrences(org.springframework.ui.Model model) Returns the complete list of Occurrences
Map<String,Object>	nearestOccurrence(SpatialSearchRequestParams requestParams) Utility method for retrieving a list of occurrences.
String	occurrenceDownload(DownloadRequestParams requestParams, org.springframework.validation.BindingResult result, String ip, String apiKey, org.springframework.ui.Model model, javax.servlet.http.HttpServletResponse response, javax.servlet.http.HttpServletRequest request) Occurrence search page uses SOLR JSON to display results Please NOTE that the q and fq provided to this URL should be obtained from SearchResultDTO.urlParameters
String	occurrenceIndexDownload(DownloadRequestParams requestParams, org.springframework.validation.BindingResult result, String apiKey, String ip, org.springframework.ui.Model model, javax.servlet.http.HttpServletResponse response, javax.servlet.http.HttpServletRequest request)
SearchResultDTO	occurrenceSearch(SpatialSearchRequestParams requestParams, String apiKey, Boolean lookupImageMetadata, javax.servlet.http.HttpServletRequest request, javax.servlet.http.HttpServletResponse response) Occurrence search page uses SOLR JSON to display results
SearchResultDTO	occurrenceSearchByArea(SpatialSearchRequestParams requestParams, org.springframework.ui.Model model) Deprecated. use occurrenceSearch(SpatialSearchRequestParams)
SearchResultDTO	occurrenceSearchByTaxon(SpatialSearchRequestParams requestParams, String guid, org.springframework.ui.Model model) Occurrence search page uses SOLR JSON to display results
SearchResultDTO	occurrenceSearchForUID(SpatialSearchRequestParams requestParams, String uid, org.springframework.ui.Model model) Occurrence search for a given collection, institution, data_resource or data_provider.
SearchResultDTO	occurrenceSearchSensitive(SpatialSearchRequestParams requestParams, String apiKey, javax.servlet.http.HttpServletRequest request, javax.servlet.http.HttpServletResponse response)
String	occurrenceSensitiveDownload(DownloadRequestParams requestParams, String apiKey, String ip, boolean fromIndex, javax.servlet.http.HttpServletResponse response, javax.servlet.http.HttpServletRequest request)
Map<String,Integer>	occurrenceSpeciesCounts(javax.servlet.http.HttpServletResponse response, javax.servlet.http.HttpServletRequest request, String separator) Webservice to report the occurrence counts for the supplied list of taxa
String	oldApiHandler(org.springframework.ui.Model model) Custom handler for the welcome view.
String	refreshCache() Occurrence search page uses SOLR JSON to display results
void	setAssertionUtils(AssertionUtils assertionUtils)
void	setContactUtils(ContactUtils contactUtils)
void	setSearchDAO(SearchDAO searchDAO)
void	setSearchUtils(SearchUtils searchUtils)
void	setSpeciesLookupService(SpeciesLookupService speciesLookupService)
Object	showOccurrence(String uuid) Occurrence record page When user supplies a uuid that is not found search for a unique record with the supplied occurrenc_id Returns a SearchResultDTO when there is more than 1 record with the supplied UUID TODO move to service layer
Object	showOccurrence(String uuid, String apiKey, String ip, javax.servlet.http.HttpServletRequest request, javax.servlet.http.HttpServletResponse response) Occurrence record page When user supplies a uuid that is not found search for a unique record with the supplied occurrence_id Returns a SearchResultDTO when there is more than 1 record with the supplied UUID
Object	showSensitiveOccurrence(String uuid, String apiKey, String ip, javax.servlet.http.HttpServletRequest request, javax.servlet.http.HttpServletResponse response)
List<OccurrenceSourceDTO>	sourceByTaxon(SpatialSearchRequestParams requestParams, String guid) Obtains a list of the sources for the supplied guid.
void	writei18nPropertiesFile(String qualifier, javax.servlet.http.HttpServletRequest request, javax.servlet.http.HttpServletResponse response) Returns the content of the messages.properties file.

Methods inherited from class au.org.ala.biocache.web.AbstractSecureController

isValidKey, shouldPerformOperation, shouldPerformOperation

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

searchDAO

@Inject
protected SearchDAO searchDAO

Fulltext search DAO

searchUtils

@Inject
protected SearchUtils searchUtils

Data Resource DAO

restfulClient

@Inject
protected org.ala.client.util.RestfulClient restfulClient

speciesLookupService

@Inject
protected SpeciesLookupService speciesLookupService

authService

@Inject
protected AuthService authService

contactUtils

@Inject
protected ContactUtils contactUtils

assertionUtils

@Inject
protected AssertionUtils assertionUtils

downloadService

@Inject
protected DownloadService downloadService

hostUrl

protected String hostUrl

taxonIDPatternString

protected String taxonIDPatternString

The response to be returned for the isAustralian test

nativeCountry

protected String nativeCountry

taxonIDPattern

protected Pattern taxonIDPattern

Compiled pattern for taxon IDs

biocacheMediaUrl

protected String biocacheMediaUrl

facetConfig

protected String facetConfig

Constructor Detail

OccurrenceController

public OccurrenceController()

Method Detail

getTaxonIDPattern

public Pattern getTaxonIDPattern()

initBinder

@InitBinder
protected void initBinder(org.springframework.web.bind.WebDataBinder binder)

Need to initialise the validator to be used otherwise the @Valid annotation will not work

Parameters:

binder -

homePageHandler

@RequestMapping(value="/")
public String homePageHandler(org.springframework.ui.Model model)

Custom handler for the welcome view.

Note that this handler relies on the RequestToViewNameTranslator to determine the logical view name based on the request URL: "/welcome.do" -> "welcome".

Returns:

viewname to render

oldApiHandler

@RequestMapping(value="/oldapi")
public String oldApiHandler(org.springframework.ui.Model model)

Custom handler for the welcome view.

Note that this handler relies on the RequestToViewNameTranslator to determine the logical view name based on the request URL: "/welcome.do" -> "welcome".

Returns:

viewname to render

getCurrentDownloads

@RequestMapping(value="/active/download/stats")
@ResponseBody
public List<DownloadDetailsDTO> getCurrentDownloads()

listAllFacets

@RequestMapping(value="/search/facets")
@ResponseBody
public String[] listAllFacets()

Returns the default facets that are applied to a search

Returns:

groupFacets

@RequestMapping(value="/search/grouped/facets")
@ResponseBody
public List groupFacets()
                 throws IOException

Returns the default facets grouped by themes that are applied to a search

Returns:

Throws:

IOException

writei18nPropertiesFile

@RequestMapping(value="/facets/i18n{qualifier:.*}*")
public void writei18nPropertiesFile(@PathVariable(value="qualifier")
                                          String qualifier,
                                          javax.servlet.http.HttpServletRequest request,
                                          javax.servlet.http.HttpServletResponse response)
                             throws Exception

Returns the content of the messages.properties file. Can also return language specific versions, such as messages_fr.properties if requested via qualifier @PathVariable.

Parameters:

response -

Throws:

Exception

getIndexedFields

@RequestMapping(value="index/fields")
@ResponseBody
public Set<IndexFieldDTO> getIndexedFields(@RequestParam(value="fl",required=false)
                                                              String fields)
                                    throws Exception

Returns a list with the details of the index field

Returns:

Throws:

Exception

getOccurrenceFacetDetails

@RequestMapping(value="occurrence/facets")
@ResponseBody
public List<FacetResultDTO> getOccurrenceFacetDetails(SpatialSearchRequestParams requestParams)
                                               throws Exception

Returns a facet list including the number of distinct values for a field

Parameters:

requestParams -

Returns:

Throws:

Exception

getImages

@RequestMapping(value={"/images/taxon/{guid:.+}.json*","/images/taxon/{guid:.+}*"})
@ResponseBody
public List<String> getImages(@PathVariable(value="guid")
                                                 String guid)
                       throws Exception

Returns a list of image urls for the supplied taxon guid. An empty list is returned when no images are available.

Parameters:

guid -

Returns:

Throws:

Exception

isAustralian

@RequestMapping(value={"/australian/taxon/{guid:.+}.json*","/australian/taxon/{guid:.+}*","/native/taxon/{guid:.+}.json*","/native/taxon/{guid:.+}*"})
@ResponseBody
public NativeDTO isAustralian(@PathVariable(value="guid")
                                                 String guid)
                       throws Exception

Checks to see if the supplied GUID represents an Australian species.

Parameters:

guid -

Returns:

Throws:

Exception

listOccurrences

@RequestMapping(value={"/occurrences","/occurrences/collections","/occurrences/institutions","/occurrences/dataResources","/occurrences/dataProviders","/occurrences/taxa","/occurrences/dataHubs"},
                method=GET)
@ResponseBody
public SearchResultDTO listOccurrences(org.springframework.ui.Model model)
                                throws Exception

Returns the complete list of Occurrences

Throws:

Exception

occurrenceSearchByTaxon

@RequestMapping(value={"/occurrences/taxon/{guid:.+}.json*","/occurrences/taxon/{guid:.+}*","/occurrences/taxa/{guid:.+}*"},
                method=GET)
@ResponseBody
public SearchResultDTO occurrenceSearchByTaxon(SpatialSearchRequestParams requestParams,
                                                                  @PathVariable(value="guid")
                                                                  String guid,
                                                                  org.springframework.ui.Model model)
                                        throws Exception

Occurrence search page uses SOLR JSON to display results

Parameters:

model -

Returns:

Throws:

Exception

sourceByTaxon

@RequestMapping(value="/occurrences/taxon/source/{guid:.+}.json*",
                method=GET)
@ResponseBody
public List<OccurrenceSourceDTO> sourceByTaxon(SpatialSearchRequestParams requestParams,
                                                                  @PathVariable(value="guid")
                                                                  String guid)
                                        throws Exception

Obtains a list of the sources for the supplied guid. I don't think that this should be necessary. We should be able to configure the requestParams facets to contain the collectino_uid, institution_uid data_resource_uid and data_provider_uid It also handle's the logging for the BIE. //TODO Work out what to do with this

Parameters:

guid -

Throws:

Exception

occurrenceSearchForUID

@RequestMapping(value={"/occurrences/collections/{uid}","/occurrences/institutions/{uid}","/occurrences/dataResources/{uid}","/occurrences/dataProviders/{uid}","/occurrences/dataHubs/{uid}"},
                method=GET)
@ResponseBody
public SearchResultDTO occurrenceSearchForUID(SpatialSearchRequestParams requestParams,
                                                                 @PathVariable(value="uid")
                                                                 String uid,
                                                                 org.springframework.ui.Model model)
                                       throws Exception

Occurrence search for a given collection, institution, data_resource or data_provider.

Parameters:

requestParams - The search parameters

uid - The uid for collection, institution, data_resource or data_provider

model -

Returns:

Throws:

Exception

occurrenceSearchByArea

@RequestMapping(value="/occurrences/searchByArea*",
                method=GET)
@Deprecated
@ResponseBody
public SearchResultDTO occurrenceSearchByArea(SpatialSearchRequestParams requestParams,
                                                                            org.springframework.ui.Model model)
                                       throws Exception

Deprecated. use occurrenceSearch(SpatialSearchRequestParams)

Spatial search for either a taxon name or full text text search

Parameters:

model -

Returns:

Throws:

Exception

occurrenceSearch

@RequestMapping(value={"/occurrences/search.json*","/occurrences/search*"},
                method=GET)
@ResponseBody
public SearchResultDTO occurrenceSearch(SpatialSearchRequestParams requestParams,
                                                           @RequestParam(value="apiKey",required=false)
                                                           String apiKey,
                                                           @RequestParam(value="im",required=false,defaultValue="false")
                                                           Boolean lookupImageMetadata,
                                                           javax.servlet.http.HttpServletRequest request,
                                                           javax.servlet.http.HttpServletResponse response)
                                 throws Exception

Occurrence search page uses SOLR JSON to display results

Returns:

Throws:

Exception

occurrenceSearchSensitive

@ResponseBody
public SearchResultDTO occurrenceSearchSensitive(SpatialSearchRequestParams requestParams,
                                                     @RequestParam(value="apiKey",required=true)
                                                     String apiKey,
                                                     javax.servlet.http.HttpServletRequest request,
                                                     javax.servlet.http.HttpServletResponse response)
                                          throws Exception

Throws:

Exception

refreshCache

@RequestMapping(value="/cache/refresh",
                method=GET)
@ResponseBody
public String refreshCache()
                    throws Exception

Occurrence search page uses SOLR JSON to display results

Returns:

Throws:

Exception

downloadFacet

@RequestMapping(value="/occurrences/facets/download*",
                method=GET)
public void downloadFacet(DownloadRequestParams requestParams,
                                @RequestParam(value="count",required=false,defaultValue="false")
                                boolean includeCount,
                                @RequestParam(value="lookup",required=false,defaultValue="false")
                                boolean lookupName,
                                @RequestParam(value="synonym",required=false,defaultValue="false")
                                boolean includeSynonyms,
                                @RequestParam(value="ip",required=false)
                                String ip,
                                javax.servlet.http.HttpServletRequest request,
                                javax.servlet.http.HttpServletResponse response)
                   throws Exception

Downloads the complete list of values in the supplied facet ONLY 1 facet should be included in the params.

Parameters:

requestParams -

response -

Throws:

Exception

batchDownload

@RequestMapping(value="/occurrences/batchSearch",
                method=POST,
                params="action=Download")
public void batchDownload(javax.servlet.http.HttpServletResponse response,
                                javax.servlet.http.HttpServletRequest request,
                                @RequestParam(value="queries",required=true,defaultValue="")
                                String queries,
                                @RequestParam(value="field",required=true,defaultValue="")
                                String field,
                                @RequestParam(value="separator",defaultValue="\n")
                                String separator,
                                @RequestParam(value="title",required=false)
                                String title)
                   throws Exception

Webservice to support bulk downloads for a long list of queries for a single field. NOTE: triggered on "Download Records" button

Parameters:

response -

request -

separator -

Throws:

Exception

batchDownload

@RequestMapping(value="/occurrences/download/batchFile",
                method=GET)
public String batchDownload(javax.servlet.http.HttpServletResponse response,
                                  javax.servlet.http.HttpServletRequest request,
                                  DownloadRequestParams params,
                                  org.springframework.validation.BindingResult result,
                                  @RequestParam(value="file",required=true)
                                  String filepath,
                                  @RequestParam(value="directory",required=true,defaultValue="/data/biocache-exports")
                                  String directory,
                                  @RequestParam(value="ip",required=false)
                                  String ip,
                                  org.springframework.ui.Model model)
                     throws Exception

Throws:

Exception

batchSearch

@RequestMapping(value="/occurrences/batchSearch",
                method=POST,
                params="action=Search")
public void batchSearch(javax.servlet.http.HttpServletResponse response,
                              @RequestParam(value="redirectBase",required=true,defaultValue="")
                              String redirectBase,
                              @RequestParam(value="queries",required=true,defaultValue="")
                              String queries,
                              @RequestParam(value="field",required=true,defaultValue="")
                              String field,
                              @RequestParam(value="separator",defaultValue="\n")
                              String separator,
                              @RequestParam(value="title",required=false)
                              String title)
                 throws Exception

Given a list of queries for a single field, return an AJAX response with the qid (cached query id) NOTE: triggered on "Search" button

Parameters:

response -

queries -

separator -

Throws:

Exception

occurrenceSpeciesCounts

@RequestMapping(value="/occurrences/taxaCount",
                method={POST,GET})
@ResponseBody
public Map<String,Integer> occurrenceSpeciesCounts(javax.servlet.http.HttpServletResponse response,
                                                                      javax.servlet.http.HttpServletRequest request,
                                                                      @RequestParam(defaultValue="\n")
                                                                      String separator)
                                            throws Exception

Webservice to report the occurrence counts for the supplied list of taxa

Throws:

Exception

occurrenceDownload

@RequestMapping(value="/occurrences/download*",
                method=GET)
public String occurrenceDownload(DownloadRequestParams requestParams,
                                       org.springframework.validation.BindingResult result,
                                       @RequestParam(value="ip",required=false)
                                       String ip,
                                       @RequestParam(value="apiKey",required=false)
                                       String apiKey,
                                       org.springframework.ui.Model model,
                                       javax.servlet.http.HttpServletResponse response,
                                       javax.servlet.http.HttpServletRequest request)
                          throws Exception

Occurrence search page uses SOLR JSON to display results Please NOTE that the q and fq provided to this URL should be obtained from SearchResultDTO.urlParameters

Returns:

Throws:

Exception

occurrenceIndexDownload

@RequestMapping(value="/occurrences/index/download*",
                method=GET)
public String occurrenceIndexDownload(DownloadRequestParams requestParams,
                                            org.springframework.validation.BindingResult result,
                                            @RequestParam(value="apiKey",required=false)
                                            String apiKey,
                                            @RequestParam(value="ip",required=false)
                                            String ip,
                                            org.springframework.ui.Model model,
                                            javax.servlet.http.HttpServletResponse response,
                                            javax.servlet.http.HttpServletRequest request)
                               throws Exception

Throws:

Exception

occurrenceSensitiveDownload

public String occurrenceSensitiveDownload(DownloadRequestParams requestParams,
                                 String apiKey,
                                 String ip,
                                 boolean fromIndex,
                                 javax.servlet.http.HttpServletResponse response,
                                 javax.servlet.http.HttpServletRequest request)
                                   throws Exception

Throws:

Exception

nearestOccurrence

@RequestMapping(value="/occurrences/nearest",
                method=GET)
@ResponseBody
public Map<String,Object> nearestOccurrence(SpatialSearchRequestParams requestParams)
                                     throws Exception

Utility method for retrieving a list of occurrences. Mainly added to help debug web services for that a developer can retrieve example UUIDs.

Throws:

Exception

dumpDistinctLatLongs

@RequestMapping(value="/occurrences/coordinates*")
public void dumpDistinctLatLongs(SearchRequestParams requestParams,
                                       javax.servlet.http.HttpServletResponse response)
                          throws Exception

Dumps the distinct latitudes and longitudes that are used in the connected index (to 4 decimal places)

Throws:

Exception

showOccurrence

@RequestMapping(value={"/occurrence/compare/{uuid}.json","/occurrence/compare/{uuid}"},
                method=GET)
@ResponseBody
public Object showOccurrence(@PathVariable(value="uuid")
                                                String uuid)

Occurrence record page When user supplies a uuid that is not found search for a unique record with the supplied occurrenc_id Returns a SearchResultDTO when there is more than 1 record with the supplied UUID TODO move to service layer

Parameters:

uuid -

Throws:

Exception

compareOccurrenceVersions

@RequestMapping(value="/occurrence/compare*",
                method=GET)
@ResponseBody
public Object compareOccurrenceVersions(@RequestParam(value="uuid",required=true)
                                                           String uuid)

Returns a comparison of the occurrence versions.

Parameters:

uuid -

Returns:

getDeleteOccurrences

@RequestMapping(value="/occurrence/deleted",
                method=GET)
@ResponseBody
public String[] getDeleteOccurrences(@RequestParam(value="date",required=true)
                                                        String fromDate,
                                                        javax.servlet.http.HttpServletResponse response)
                              throws Exception

Returns the records uuids that have been deleted since the fromDate inclusive.

Parameters:

fromDate -

response -

Returns:

Throws:

Exception

showOccurrence

@RequestMapping(value={"/occurrence/{uuid:.+}","/occurrences/{uuid:.+}","/occurrence/{uuid:.+}.json","/occurrences/{uuid:.+}.json"},
                method=GET)
@ResponseBody
public Object showOccurrence(@PathVariable(value="uuid")
                                                String uuid,
                                                @RequestParam(value="apiKey",required=false)
                                                String apiKey,
                                                @RequestParam(value="ip",required=false)
                                                String ip,
                                                javax.servlet.http.HttpServletRequest request,
                                                javax.servlet.http.HttpServletResponse response)
                      throws Exception

Occurrence record page When user supplies a uuid that is not found search for a unique record with the supplied occurrence_id Returns a SearchResultDTO when there is more than 1 record with the supplied UUID

Parameters:

uuid -

apiKey -

Throws:

Exception

showSensitiveOccurrence

@RequestMapping(value={"/sensitive/occurrence/{uuid:.+}","/sensitive/occurrences/{uuid:.+}","/sensitive/occurrence/{uuid:.+}.json","/senstive/occurrences/{uuid:.+}.json"},
                method=GET)
@ResponseBody
public Object showSensitiveOccurrence(@PathVariable(value="uuid")
                                                         String uuid,
                                                         @RequestParam(value="apiKey",required=true)
                                                         String apiKey,
                                                         @RequestParam(value="ip",required=false)
                                                         String ip,
                                                         javax.servlet.http.HttpServletRequest request,
                                                         javax.servlet.http.HttpServletResponse response)
                               throws Exception

Throws:

Exception

setSearchDAO

public void setSearchDAO(SearchDAO searchDAO)

setSearchUtils

public void setSearchUtils(SearchUtils searchUtils)

setSpeciesLookupService

public void setSpeciesLookupService(SpeciesLookupService speciesLookupService)

setContactUtils

public void setContactUtils(ContactUtils contactUtils)

setAssertionUtils

public void setAssertionUtils(AssertionUtils assertionUtils)