au.org.ala.biocache.dao

Class SearchDAOImpl

java.lang.Object

au.org.ala.biocache.dao.SearchDAOImpl

All Implemented Interfaces:

SearchDAO

@Component(value="searchDao")
public class SearchDAOImpl
extends Object
implements SearchDAO

SOLR implementation of SearchDao. Uses embedded SOLR server (can be a memory hog).

Author:

"Nick dos Remedios "

See Also:

SearchDAO

Field Summary

Fields

Modifier and Type	Field and Description
protected AuthService	authService
protected String	authServiceFields Comma separated list of solr fields that need to have the authService substitute values if they are used in a facet.
static String	biocacheMediaDir
static String	biocacheMediaUrl
protected static char[]	CHARS
static String	COMMON_NAME_AND_LSID
protected static String	DECADE_FACET_NAME
protected Integer	downloadBatchSize Batch size for a download
protected DownloadFields	downloadFields Download properties
protected static Integer	FACET_PAGE_SIZE
protected Pattern	indexFieldPatternMatcher
protected Pattern	layersPattern
protected LayersService	layersService
protected Pattern	lsidPattern
protected Integer	MAX_DOWNLOAD_SIZE Limit search results - for performance reasons
protected Integer	maxMultiPartThreads Max number of threads to use in endemic queries
static String	NAMES_AND_LSID
protected Pattern	qidPattern
protected org.apache.solr.client.solrj.SolrRequest.METHOD	queryMethod
protected static String	QUOTE
protected static String	RANGE_SUFFIX
protected SearchUtils	searchUtils
protected org.apache.solr.client.solrj.SolrServer	server SOLR server instance
protected Pattern	spacesPattern
protected Pattern	spatialPattern
protected Pattern	termPattern
protected Integer	termQueryLimit
protected Pattern	uidPattern
protected Pattern	urnPattern
protected Boolean	usingLocalMediaRepo Max number of threads to use in endemic queries

Constructor Summary

Constructors

Constructor and Description
SearchDAOImpl() Initialise the SOLR server instance

Method Summary

Methods

Modifier and Type	Method and Description
protected String	buildSpatialQueryString(SpatialSearchRequestParams searchParams)
protected String	buildSpatialQueryString(String fullTextQuery, Float latitude, Float longitude, Float radius) Build the query string for a spatial query (using Spatial-Solr plugin syntax) TODO change param type to SearchRequestParams New plugin syntax {!spatial circles=52.347,4.453,10} TODO different types of spatial queries...
TaxaRankCountDTO	calculateBreakdown(BreakdownRequestParams queryParams) Calculates the breakdown of the supplied query based on the supplied params
List<TaxaCountDTO>	findAllSpecies(SpatialSearchRequestParams requestParams) Find all species (and counts) for a given query.
List<TaxaCountDTO>	findAllSpeciesByCircleAreaAndHigherTaxa(SpatialSearchRequestParams requestParams, String speciesGroup) Find all species (and counts) for a given location search (lat/long and radius) and a higher taxon (with rank)
org.apache.solr.common.SolrDocumentList	findByFulltext(SpatialSearchRequestParams searchParams) Find all occurrences for a given query as SolrDocumentList
SearchResultDTO	findByFulltextSpatialQuery(SpatialSearchRequestParams searchParams, boolean includeSensitive, Map<String,String[]> extraParams) Find all occurrences for a given (full text) query, latitude, longitude & radius (km).
SearchResultDTO	findByFulltextSpatialQuery(SpatialSearchRequestParams searchParams, Map<String,String[]> extraParams) Find all occurrences for a given (full text) query, latitude, longitude & radius (km).
List<FieldResultDTO>	findRecordByStateFor(String query)
List<OccurrencePoint>	findRecordsForLocation(SpatialSearchRequestParams requestParams, PointType pointType) Get a list of occurrence points for a given lat/long and distance (radius)
TaxaRankCountDTO	findTaxonCountForUid(BreakdownRequestParams breakdownParams, String query) Deprecated. use calculateBreakdown(BreakdownRequestParams) instead
String	formatDisplayStringWithI18n(String displayText) Substitute with i18n properties
protected void	formatSearchQuery(SpatialSearchRequestParams searchParams)
protected void	formatSearchQuery(SpatialSearchRequestParams searchParams, boolean forceQueryFormat) Format the search input query for a full-text search.
Set<String>	getAuthIndexFields()
List<DataProviderCountDTO>	getDataProviderCounts() http://ala-biocache1.vm.csiro.au:8080/solr/select?q=*:*&rows=0&facet=true&facet.field=data_provider_id&facet.field=data_provider&facet.sort=data_provider_id
List<DataProviderCountDTO>	getDataProviderList(SpatialSearchRequestParams requestParams) Get a data provider list for a query.
List<FieldResultDTO>	getEndemicSpecies(SpatialSearchRequestParams requestParams) Returns a list of species that are endemic to the supplied region.
org.apache.solr.client.solrj.response.FacetField	getFacet(SpatialSearchRequestParams searchParams, String facet)
List<FacetResultDTO>	getFacetCounts(SpatialSearchRequestParams searchParams) Returns the count of distinct values for the facets.
List<OccurrencePoint>	getFacetPoints(SpatialSearchRequestParams searchParams, PointType pointType) Retrieve an OccurrencePoint (distinct list of points - lat-long to 4 decimal places) for a given search
Set<IndexFieldDTO>	getIndexedFields() Returns details about the fields in the index.
Set<IndexFieldDTO>	getIndexFieldDetails(String... fields) Gets the details about the SOLR fields using the LukeRequestHandler: See http://wiki.apache.org/solr/LukeRequestHandler for more information
List<LegendItem>	getLegend(SpatialSearchRequestParams searchParams, String facetField, String[] cutpoints) Get legend items for a query and specified facet.
Integer	getMaxMultiPartThreads()
Map<String,Integer>	getOccurrenceCountsForTaxa(List<String> taxa) Returns the occurrence counts based on lft and rgt values for each of the supplied taxa.
List<OccurrencePoint>	getOccurrences(SpatialSearchRequestParams searchParams, PointType pointType, String colourBy, int searchType) Retrieve a list of occurrence uid's for a given search
protected String[]	getQueryContextAsArray(String queryContext)
Map<String,Integer>	getSourcesForQuery(SpatialSearchRequestParams searchParams) Obtains a list and facet count of the source uids for the supplied query.
protected List<TaxaCountDTO>	getSpeciesCounts(String queryString, List<String> filterQueries, List<String> facetFields, Integer pageSize, Integer startIndex, String sortField, String sortDirection) Get a distinct list of species and their counts using a facet search
Map<String,org.apache.solr.client.solrj.response.FieldStatsInfo>	getStatistics(SpatialSearchRequestParams searchParams) Statistics for each of the fields included as facets.
Integer	getThrottle()
List<FieldResultDTO>	getValuesForFacet(SpatialSearchRequestParams requestParams) Returns the values and counts for a single facet field.
protected void	initDecadeBasedFacet(org.apache.solr.client.solrj.SolrQuery solrQuery, String field)
protected org.apache.solr.client.solrj.SolrQuery	initSolrQuery(SearchRequestParams searchParams, boolean substituteDefaultFacetOrder, Map<String,String[]> extraSolrParams) Helper method to create SolrQuery object and add facet settings
void	refreshCaches() Refresh any caches in use to populate queries.
void	setMaxMultiPartThreads(Integer maxMultiPartThreads)
void	setThrottle(Integer throttle)
protected void	updateQueryContext(SearchRequestParams searchParams) Updates the supplied search params to cater for the query context
void	writeCoordinatesToStream(SearchRequestParams searchParams, OutputStream out) Writes all the distinct latitude and longitude in the index to the supplied output stream.
void	writeFacetToStream(SpatialSearchRequestParams searchParams, boolean includeCount, boolean lookupName, boolean includeSynonyms, OutputStream out, DownloadDetailsDTO dd) Writes the values for the first supplied facet to output stream
Map<String,Integer>	writeResultsFromIndexToStream(DownloadRequestParams downloadParams, OutputStream out, boolean includeSensitive, DownloadDetailsDTO dd, boolean checkLimit) Writes the index fields to the supplied output stream in CSV format.
Map<String,Integer>	writeResultsToStream(DownloadRequestParams downloadParams, OutputStream out, int i, boolean includeSensitive, DownloadDetailsDTO dd) Note - this method extracts from CASSANDRA rather than the Index.
int	writeSpeciesCountByCircleToStream(SpatialSearchRequestParams searchParams, String speciesGroup, javax.servlet.ServletOutputStream out) Writes the species count in the specified circle to the output stream.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

server

protected org.apache.solr.client.solrj.SolrServer server

SOLR server instance

queryMethod

protected org.apache.solr.client.solrj.SolrRequest.METHOD queryMethod

MAX_DOWNLOAD_SIZE

protected Integer MAX_DOWNLOAD_SIZE

Limit search results - for performance reasons

downloadBatchSize

protected Integer downloadBatchSize

Batch size for a download

NAMES_AND_LSID

public static final String NAMES_AND_LSID

See Also:

Constant Field Values

COMMON_NAME_AND_LSID

public static final String COMMON_NAME_AND_LSID

See Also:

Constant Field Values

DECADE_FACET_NAME

protected static final String DECADE_FACET_NAME

See Also:

Constant Field Values

FACET_PAGE_SIZE

protected static final Integer FACET_PAGE_SIZE

QUOTE

protected static final String QUOTE

See Also:

Constant Field Values

CHARS

protected static final char[] CHARS

RANGE_SUFFIX

protected static final String RANGE_SUFFIX

See Also:

Constant Field Values

lsidPattern

protected Pattern lsidPattern

urnPattern

protected Pattern urnPattern

spacesPattern

protected Pattern spacesPattern

uidPattern

protected Pattern uidPattern

spatialPattern

protected Pattern spatialPattern

qidPattern

protected Pattern qidPattern

termPattern

protected Pattern termPattern

indexFieldPatternMatcher

protected Pattern indexFieldPatternMatcher

layersPattern

protected Pattern layersPattern

downloadFields

protected DownloadFields downloadFields

Download properties

searchUtils

@Inject
protected SearchUtils searchUtils

authService

@Inject
protected AuthService authService

layersService

@Inject
protected LayersService layersService

usingLocalMediaRepo

protected Boolean usingLocalMediaRepo

Max number of threads to use in endemic queries

maxMultiPartThreads

protected Integer maxMultiPartThreads

Max number of threads to use in endemic queries

termQueryLimit

protected Integer termQueryLimit

authServiceFields

protected String authServiceFields

Comma separated list of solr fields that need to have the authService substitute values if they are used in a facet.

biocacheMediaUrl

public static String biocacheMediaUrl

biocacheMediaDir

public static String biocacheMediaDir

Constructor Detail

SearchDAOImpl

public SearchDAOImpl()

Initialise the SOLR server instance

Method Detail

getAuthIndexFields

public Set<String> getAuthIndexFields()

refreshCaches

public void refreshCaches()

Description copied from interface: SearchDAO

Refresh any caches in use to populate queries.

Specified by:

refreshCaches in interface SearchDAO

getEndemicSpecies

@Cacheable(cacheName="endemicCache")
public List<FieldResultDTO> getEndemicSpecies(SpatialSearchRequestParams requestParams)
                                       throws Exception

Returns a list of species that are endemic to the supplied region. Values are cached due to the "expensive" operation.

Specified by:

getEndemicSpecies in interface SearchDAO

Returns:

Throws:

Exception

getValuesForFacet

public List<FieldResultDTO> getValuesForFacet(SpatialSearchRequestParams requestParams)
                                       throws Exception

Returns the values and counts for a single facet field.

Specified by:

getValuesForFacet in interface SearchDAO

Returns:

Throws:

Exception

findByFulltextSpatialQuery

public SearchResultDTO findByFulltextSpatialQuery(SpatialSearchRequestParams searchParams,
                                         Map<String,String[]> extraParams)

Description copied from interface: SearchDAO

Find all occurrences for a given (full text) query, latitude, longitude & radius (km). I.e. a full-text spatial query.

Specified by:

findByFulltextSpatialQuery in interface SearchDAO

Returns:

See Also:

SearchDAO.findByFulltextSpatialQuery(au.org.ala.biocache.dto.SpatialSearchRequestParams, java.util.Map<java.lang.String, java.lang.String[]>)

findByFulltextSpatialQuery

public SearchResultDTO findByFulltextSpatialQuery(SpatialSearchRequestParams searchParams,
                                         boolean includeSensitive,
                                         Map<String,String[]> extraParams)

Description copied from interface: SearchDAO

Find all occurrences for a given (full text) query, latitude, longitude & radius (km). I.e. a full-text spatial query. The result will include the sensitive coordinates if available.

Specified by:

findByFulltextSpatialQuery in interface SearchDAO

Returns:

writeSpeciesCountByCircleToStream

public int writeSpeciesCountByCircleToStream(SpatialSearchRequestParams searchParams,
                                    String speciesGroup,
                                    javax.servlet.ServletOutputStream out)
                                      throws Exception

Description copied from interface: SearchDAO

Writes the species count in the specified circle to the output stream.

Specified by:

writeSpeciesCountByCircleToStream in interface SearchDAO

Returns:

Throws:

Exception

See Also:

SearchDAO.writeSpeciesCountByCircleToStream(au.org.ala.biocache.dto.SpatialSearchRequestParams, String, javax.servlet.ServletOutputStream)

writeFacetToStream

public void writeFacetToStream(SpatialSearchRequestParams searchParams,
                      boolean includeCount,
                      boolean lookupName,
                      boolean includeSynonyms,
                      OutputStream out,
                      DownloadDetailsDTO dd)
                        throws Exception

Writes the values for the first supplied facet to output stream

Specified by:

writeFacetToStream in interface SearchDAO

Parameters:

includeCount - true when the count should be included in the download

lookupName - true when a name lsid should be looked up in the bie

Throws:

Exception

writeCoordinatesToStream

public void writeCoordinatesToStream(SearchRequestParams searchParams,
                            OutputStream out)
                              throws Exception

Writes all the distinct latitude and longitude in the index to the supplied output stream.

Specified by:

writeCoordinatesToStream in interface SearchDAO

Parameters:

out -

Throws:

Exception

writeResultsFromIndexToStream

public Map<String,Integer> writeResultsFromIndexToStream(DownloadRequestParams downloadParams,
                                                OutputStream out,
                                                boolean includeSensitive,
                                                DownloadDetailsDTO dd,
                                                boolean checkLimit)
                                                  throws Exception

Writes the index fields to the supplied output stream in CSV format. DM: refactored to split the query by month to improve performance. Further enhancements possible: 1) Multi threaded 2) More filtering, by year or decade..

Specified by:

writeResultsFromIndexToStream in interface SearchDAO

Parameters:

downloadParams -

out -

includeSensitive -

Returns:

Throws:

Exception

writeResultsToStream

public Map<String,Integer> writeResultsToStream(DownloadRequestParams downloadParams,
                                       OutputStream out,
                                       int i,
                                       boolean includeSensitive,
                                       DownloadDetailsDTO dd)
                                         throws Exception

Note - this method extracts from CASSANDRA rather than the Index.

Specified by:

writeResultsToStream in interface SearchDAO

includeSensitive - Whether or not the sensitive values should be included in the download

Returns:

A map of uids and counts that needs to be logged to the ala-logger

Throws:

Exception

getFacetPoints

public List<OccurrencePoint> getFacetPoints(SpatialSearchRequestParams searchParams,
                                   PointType pointType)
                                     throws Exception

Description copied from interface: SearchDAO

Retrieve an OccurrencePoint (distinct list of points - lat-long to 4 decimal places) for a given search

Specified by:

getFacetPoints in interface SearchDAO

Returns:

Throws:

Exception

See Also:

SearchDAO.getFacetPoints(au.org.ala.biocache.dto.SpatialSearchRequestParams, au.org.ala.biocache.dto.PointType)

getOccurrences

public List<OccurrencePoint> getOccurrences(SpatialSearchRequestParams searchParams,
                                   PointType pointType,
                                   String colourBy,
                                   int searchType)
                                     throws Exception

Description copied from interface: SearchDAO

Retrieve a list of occurrence uid's for a given search

Specified by:

getOccurrences in interface SearchDAO

Returns:

Throws:

Exception

See Also:

SearchDAO.getOccurrences(au.org.ala.biocache.dto.SpatialSearchRequestParams, au.org.ala.biocache.dto.PointType, String, int)

getDataProviderCounts

public List<DataProviderCountDTO> getDataProviderCounts()
                                                 throws Exception

http://ala-biocache1.vm.csiro.au:8080/solr/select?q=*:*&rows=0&facet=true&facet.field=data_provider_id&facet.field=data_provider&facet.sort=data_provider_id

Specified by:

getDataProviderCounts in interface SearchDAO

Returns:

Throws:

Exception

See Also:

SearchDAO.getDataProviderCounts()

findRecordsForLocation

public List<OccurrencePoint> findRecordsForLocation(SpatialSearchRequestParams requestParams,
                                           PointType pointType)
                                             throws Exception

Description copied from interface: SearchDAO

Get a list of occurrence points for a given lat/long and distance (radius)

Specified by:

findRecordsForLocation in interface SearchDAO

Returns:

Throws:

Exception

See Also:

This is used by explore your area

findAllSpeciesByCircleAreaAndHigherTaxa

public List<TaxaCountDTO> findAllSpeciesByCircleAreaAndHigherTaxa(SpatialSearchRequestParams requestParams,
                                                         String speciesGroup)
                                                           throws Exception

Description copied from interface: SearchDAO

Find all species (and counts) for a given location search (lat/long and radius) and a higher taxon (with rank)

Specified by:

findAllSpeciesByCircleAreaAndHigherTaxa in interface SearchDAO

Returns:

Throws:

Exception

See Also:

SearchDAO.findAllSpeciesByCircleAreaAndHigherTaxa(au.org.ala.biocache.dto.SpatialSearchRequestParams, String)

findRecordByStateFor

public List<FieldResultDTO> findRecordByStateFor(String query)
                                          throws Exception

Specified by:

findRecordByStateFor in interface SearchDAO

Throws:

Exception

See Also:

IS THIS BEGIN USED OR NECESSARY

calculateBreakdown

public TaxaRankCountDTO calculateBreakdown(BreakdownRequestParams queryParams)
                                    throws Exception

Calculates the breakdown of the supplied query based on the supplied params

Specified by:

calculateBreakdown in interface SearchDAO

Returns:

Throws:

Exception

findTaxonCountForUid

@Deprecated
public TaxaRankCountDTO findTaxonCountForUid(BreakdownRequestParams breakdownParams,
                                               String query)
                                      throws Exception

Deprecated. use calculateBreakdown(BreakdownRequestParams) instead

Description copied from interface: SearchDAO

Returns the scientific name and counts for the taxon rank that proceed or include the supplied rank.

Specified by:

findTaxonCountForUid in interface SearchDAO

Returns:

Throws:

Exception

See Also:

SearchDAO.findTaxonCountForUid(au.org.ala.biocache.dto.BreakdownRequestParams, String)

buildSpatialQueryString

protected String buildSpatialQueryString(String fullTextQuery,
                             Float latitude,
                             Float longitude,
                             Float radius)

Build the query string for a spatial query (using Spatial-Solr plugin syntax) TODO change param type to SearchRequestParams New plugin syntax {!spatial circles=52.347,4.453,10} TODO different types of spatial queries...

Parameters:

fullTextQuery -

latitude -

longitude -

radius -

Returns:

buildSpatialQueryString

protected String buildSpatialQueryString(SpatialSearchRequestParams searchParams)

formatSearchQuery

protected void formatSearchQuery(SpatialSearchRequestParams searchParams)

formatSearchQuery

protected void formatSearchQuery(SpatialSearchRequestParams searchParams,
                     boolean forceQueryFormat)

Format the search input query for a full-text search. This includes constructing a user friendly version of the query to be used for display purposes. TODO Fix this to use a state. REVISE!!

Parameters:

searchParams -

formatDisplayStringWithI18n

public String formatDisplayStringWithI18n(String displayText)

Substitute with i18n properties

Parameters:

displayText -

Returns:

updateQueryContext

protected void updateQueryContext(SearchRequestParams searchParams)

Updates the supplied search params to cater for the query context

Parameters:

searchParams -

getQueryContextAsArray

protected String[] getQueryContextAsArray(String queryContext)

initDecadeBasedFacet

protected void initDecadeBasedFacet(org.apache.solr.client.solrj.SolrQuery solrQuery,
                        String field)

initSolrQuery

protected org.apache.solr.client.solrj.SolrQuery initSolrQuery(SearchRequestParams searchParams,
                                                   boolean substituteDefaultFacetOrder,
                                                   Map<String,String[]> extraSolrParams)

Helper method to create SolrQuery object and add facet settings

Returns:

solrQuery the SolrQuery

getSpeciesCounts

protected List<TaxaCountDTO> getSpeciesCounts(String queryString,
                                  List<String> filterQueries,
                                  List<String> facetFields,
                                  Integer pageSize,
                                  Integer startIndex,
                                  String sortField,
                                  String sortDirection)
                                       throws org.apache.solr.client.solrj.SolrServerException

Get a distinct list of species and their counts using a facet search

Parameters:

queryString -

pageSize -

sortField -

sortDirection -

Returns:

Throws:

org.apache.solr.client.solrj.SolrServerException

getSourcesForQuery

public Map<String,Integer> getSourcesForQuery(SpatialSearchRequestParams searchParams)
                                       throws Exception

Obtains a list and facet count of the source uids for the supplied query.

Specified by:

getSourcesForQuery in interface SearchDAO

Parameters:

searchParams -

Returns:

Throws:

Exception

getIndexFieldDetails

public Set<IndexFieldDTO> getIndexFieldDetails(String... fields)
                                        throws Exception

Gets the details about the SOLR fields using the LukeRequestHandler: See http://wiki.apache.org/solr/LukeRequestHandler for more information

Specified by:

getIndexFieldDetails in interface SearchDAO

Returns:

Throws:

Exception

getFacetCounts

public List<FacetResultDTO> getFacetCounts(SpatialSearchRequestParams searchParams)
                                    throws Exception

Returns the count of distinct values for the facets. Uses groups. Needs some more work to determine best use... TODO work out whether or not we should allow facet ranges to be downloaded....

Specified by:

getFacetCounts in interface SearchDAO

Returns:

Throws:

Exception

getIndexedFields

public Set<IndexFieldDTO> getIndexedFields()
                                    throws Exception

Returns details about the fields in the index.

Specified by:

getIndexedFields in interface SearchDAO

Returns:

Throws:

Exception

findByFulltext

public org.apache.solr.common.SolrDocumentList findByFulltext(SpatialSearchRequestParams searchParams)
                                                       throws Exception

Description copied from interface: SearchDAO

Find all occurrences for a given query as SolrDocumentList

Specified by:

findByFulltext in interface SearchDAO

Returns:

Throws:

Exception

See Also:

SearchDAO.findByFulltext(SpatialSearchRequestParams)

getStatistics

public Map<String,org.apache.solr.client.solrj.response.FieldStatsInfo> getStatistics(SpatialSearchRequestParams searchParams)
                                                                               throws Exception

Description copied from interface: SearchDAO

Statistics for each of the fields included as facets. Statistics are only possible for numeric fields.

Specified by:

getStatistics in interface SearchDAO

Returns:

Throws:

Exception

See Also:

SearchDAO.getStatistics(SpatialSearchRequestParams)

getLegend

public List<LegendItem> getLegend(SpatialSearchRequestParams searchParams,
                         String facetField,
                         String[] cutpoints)
                           throws Exception

Description copied from interface: SearchDAO

Get legend items for a query and specified facet. Continuous variable cut-points can be specified. Includes the minimum and maximum values. Returns an empty list if no valid values are found.

Specified by:

getLegend in interface SearchDAO

Returns:

Throws:

Exception

getFacet

public org.apache.solr.client.solrj.response.FacetField getFacet(SpatialSearchRequestParams searchParams,
                                                        String facet)
                                                          throws Exception

Throws:

Exception

getDataProviderList

public List<DataProviderCountDTO> getDataProviderList(SpatialSearchRequestParams requestParams)
                                               throws Exception

Description copied from interface: SearchDAO

Get a data provider list for a query.

Specified by:

getDataProviderList in interface SearchDAO

Returns:

Throws:

Exception

findAllSpecies

public List<TaxaCountDTO> findAllSpecies(SpatialSearchRequestParams requestParams)
                                  throws Exception

Description copied from interface: SearchDAO

Find all species (and counts) for a given query.

Specified by:

findAllSpecies in interface SearchDAO

Returns:

Throws:

Exception

See Also:

SearchDAO.findAllSpecies(SpatialSearchRequestParams)

getOccurrenceCountsForTaxa

public Map<String,Integer> getOccurrenceCountsForTaxa(List<String> taxa)
                                               throws Exception

Description copied from interface: SearchDAO

Returns the occurrence counts based on lft and rgt values for each of the supplied taxa.

Specified by:

getOccurrenceCountsForTaxa in interface SearchDAO

Returns:

Throws:

Exception

getMaxMultiPartThreads

public Integer getMaxMultiPartThreads()

Returns:

the maxMultiPartThreads

setMaxMultiPartThreads

public void setMaxMultiPartThreads(Integer maxMultiPartThreads)

Parameters:

maxMultiPartThreads - the maxMultiPartThreads to set

getThrottle

public Integer getThrottle()

Returns:

the throttle

setThrottle

public void setThrottle(Integer throttle)

Parameters:

throttle - the throttle to set